RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1233465", tax_kingdom = "Orthornavirae" and tax_phylum = "Kitrinoviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA1233465 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25953849 25953849 PRJNA1233465d_S_NODE_97972_length_184_cov_1.251852_g96861_i0 PRJNA1233465 97972 184 1.251852 2.30340768 Bean leafroll virus 12041 Viruses Viruses 276 8.550000000000001e-70   NTclustered gi|2737909982|gb|PP744501.1| 12041 g96861 i0 97.516 11 161 4 88 0 11 171 5892 5732 MAG: Bean leafroll virus isolate BLRV-12413-Dunnington-BFS-consensus genomic sequence blastn 2024 276 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Luteovirus Luteovirus phaseoli
26488760 26488760 PRJNA1233465b_S_NODE_100776_length_274_cov_4.013333_g99091_i0 PRJNA1233465 100776 274 4.013333 10.99653242 Foveavirus mali 35350 Viruses Viruses 357 4.759999999999999e-94   NTclustered gi|2111968993|gb|MZ147990.1| 35350 g99091 i0 90.182 97.6204379562044 275 25 100 2 1 274 9017 9290 Foveavirus mali isolate 13TF147A, complete genome blastn 26748 357 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Foveavirus Foveavirus mali
26506579 26506579 PRJNA1233465f_S_NODE_158464_length_196_cov_1.183673_g156184_i0 PRJNA1233465 158464 196 1.183673 2.31999908 Bean leafroll virus 12041 Viruses Viruses 267 5.5599999999999996e-67   NTclustered gi|2737909982|gb|PP744501.1| 12041 g156184 i0 96.296 8.9234693877551 162 6 83 0 25 186 5731 5892 MAG: Bean leafroll virus isolate BLRV-12413-Dunnington-BFS-consensus genomic sequence blastn 1749 267 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales Tombusviridae Luteovirus Luteovirus phaseoli
33138531 33138531 PRJNA1233465e_S_NODE_82407_length_208_cov_6916.125786_g81097_i0 PRJNA1233465 82407 208 6916.125786 14385.54163488 Bovine viral diarrhea virus T-2 3052619 Viruses Viruses 44.3 0.00704   NR BAD04938.1 233889 g81097 i0 65.7 0.504807692307692 35 12 50.5 0 1 105 1436 1470 BAD04938.1 poryprotein, partial [Bovine viral diarrhea virus T-20] diamond 105 44.3 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;