RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1233465", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26090304 26090304 PRJNA1233465e_S_NODE_111789_length_184_cov_1.511111_g110479_i0 PRJNA1233465 111789 184 1.511111 2.78044424 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 115 6.199999999999998e-29   NR YP_009118077.1 372086 g110479 i0 88.3 2.93478260869565 60 7 97.8 0 182 3 165 224 YP_009118077.1 ATP synthase F1 subunit alpha [Paracercomonas marina] diamond 540 115 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
26232425 26232425 PRJNA1233465f_S_NODE_113902_length_226_cov_1.237288_g111622_i0 PRJNA1233465 113902 226 1.237288 2.79627088 root 1 Root_unresolved Root_unresolved 104 6.289999999999999e-24   NR YP_009118054.1 372086 g111622 i0 86.5 1.38053097345133 52 7 69 0 34 189 739 790 YP_009118054.1 cytochrome c oxidase subunit 1 and subunit 2 fusion protein [Paracercomonas marina] diamond 312 104 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;