RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1233465" and tax_clade = "SAR92 clade"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR92 clade · 2 ✖

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32915483 32915483 PRJNA1233465d_S_NODE_100337_length_182_cov_1.593985_g99226_i0 PRJNA1233465 100337 182 1.593985 2.9010527 SAR92 clade bacterium H231 2975451 Bacteria Bacteria 47 5.24e-4   NR MCT2533594.1 2975451 g99226 i0 47.2 0.873626373626374 53 28 87.4 0 164 6 156 208 MCT2533594.1 lipopolysaccharide biosynthesis protein [SAR92 clade bacterium H231] diamond 159 47 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   SAR92 clade bacterium H231
33104824 33104824 PRJNA1233465f_S_NODE_224742_length_169_cov_2.233333_g222462_i0 PRJNA1233465 224742 169 2.233333 3.77433277 SAR92 clade bacterium H231 2975451 Bacteria Bacteria 45.8 0.00109   NR MCT2533594.1 2975451 g222462 i0 47.2 0.940828402366864 53 28 94.1 0 164 6 156 208 MCT2533594.1 lipopolysaccharide biosynthesis protein [SAR92 clade bacterium H231] diamond 159 45.8 1 Bacteria SAR92 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Porticoccaceae   SAR92 clade bacterium H231

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;