RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1233465" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 2 ✖

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33060444 33060444 PRJNA1233465f_S_NODE_120397_length_220_cov_2.684211_g118117_i0 PRJNA1233465 120397 220 2.684211 5.9052642 SAR86 cluster 62672 Bacteria Bacteria 43.5 0.013   NR KRO99867.1 1655611 g118117 i0 41.5 3.79090909090909 53 30 70.9 1 63 218 184 236 KRO99867.1 MAG: hypothetical protein ABS09_05920, partial [SAR86 cluster bacterium BACL1 MAG-120619-bin26] diamond 834 43.5 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium BACL1 MAG-120619-bin26
33179806 33179806 PRJNA1233465d_S_NODE_102176_length_181_cov_1.159091_g101065_i0 PRJNA1233465 102176 181 1.159091 2.09795471 SAR86 cluster 62672 Bacteria Bacteria 42.7 0.0148   NR KRO99867.1 1655611 g101065 i0 41.5 3.46408839779006 53 30 86.2 1 24 179 184 236 KRO99867.1 MAG: hypothetical protein ABS09_05920, partial [SAR86 cluster bacterium BACL1 MAG-120619-bin26] diamond 627 43.1 0.990719257540603 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium BACL1 MAG-120619-bin26

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;