RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1233465", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1233465 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25944754 25944754 PRJNA1233465b_S_NODE_117940_length_259_cov_1.214286_g116255_i0 PRJNA1233465 117940 259 1.214286 3.14500074 Bacteria 2 Bacteria Bacteria 116 6.21e-28   NR OGV72437.1 1798577 g116255 i0 70.1 5.44401544401544 77 23 89.2 0 3 233 822 898 OGV72437.1 MAG: hypothetical protein A3K18_20495 [Lentisphaerae bacterium RIFOXYA12_64_32] diamond 1410 116 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_64_32
32949253 32949253 PRJNA1233465b_S_NODE_132714_length_247_cov_3.090909_g131029_i0 PRJNA1233465 132714 247 3.090909 7.63454523 Lentisphaerota bacterium 1932692 Bacteria Bacteria 101 9.75e-23   NR NQT92760.1 1932692 g131029 i0 69.4 0.874493927125506 72 22 87.4 0 245 30 776 847 NQT92760.1 protein kinase [Lentisphaerota bacterium] diamond 216 101 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
33051507 33051507 PRJNA1233465b_S_NODE_108261_length_267_cov_2.444954_g106576_i0 PRJNA1233465 108261 267 2.444954 6.52802718 Lentisphaerota bacterium 1932692 Bacteria Bacteria 90.5 3.6e-19   NR NQT92759.1 1932692 g106576 i0 50.6 1.9438202247191 87 42 97.8 1 5 265 19 104 NQT92759.1 hypothetical protein [Lentisphaerota bacterium] diamond 519 90.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
33104760 33104760 PRJNA1233465f_S_NODE_201302_length_177_cov_2.000000_g199022_i0 PRJNA1233465 201302 177 2 3.54 Lentisphaerae bacterium ADurb.Bin242 1852900 Bacteria Bacteria 48.1 1.83e-4   NR OQA84035.1 1852900 g199022 i0 56.8 0.627118644067797 37 16 62.7 0 2 112 4 40 OQA84035.1 MAG: hypothetical protein BWY31_02564 [Lentisphaerae bacterium ADurb.Bin242] diamond 111 48.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium ADurb.Bin242

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;