RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1233465", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1233465 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25534828 25534828 PRJNA1233465a_S_NODE_48225_length_298_cov_6.208835_g46951_i0 PRJNA1233465 48225 298 6.208835 18.5023283 Methanobrevibacter olleyae 294671 Archaea Archaea 52.8 0.028   NTclustered gi|998157363|gb|CP014265.1| 294671 g46951 i0 100 0.0939597315436242 28 0 9 0 47 74 786716 786689 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
25693827 25693827 PRJNA1233465f_S_NODE_254162_length_163_cov_1.438596_g251882_i0 PRJNA1233465 254162 163 1.438596 2.34491148 Methanobrevibacter arboriphilus 39441 Archaea Archaea 52.8 0.014   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g251882 i0 100 0.171779141104294 28 0 17 0 97 124 1974917 1974944 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
26509159 26509159 PRJNA1233465f_S_NODE_220208_length_171_cov_1.147541_g217928_i0 PRJNA1233465 220208 171 1.147541 1.96229511 Methanobrevibacter olleyae 294671 Archaea Archaea 52.8 0.014   NTclustered gi|998157363|gb|CP014265.1| 294671 g217928 i0 100 0.16374269005848 28 0 16 0 70 97 786689 786716 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
33085793 33085793 PRJNA1233465b_S_NODE_186166_length_216_cov_0.916168_g184481_i0 PRJNA1233465 186166 216 0.916168 1.97892288 Methanobrevibacter sp. 66852 Archaea Archaea 90.9 1.04e-19   NR MBO7692650.1 66852 g184481 i0 53.6 0.958333333333333 69 32 95.8 0 207 1 1 69 MBO7692650.1 PhoH family protein [Methanobrevibacter sp.] diamond 207 90.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;