RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1233465", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

  • Eukaryota · 7 ✖

tax_clade 1

  • Metamonada · 7 ✖

bioproject 1

  • PRJNA1233465 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25537867 25537867 PRJNA1233465b_S_NODE_222745_length_200_cov_1.205298_g221060_i0 PRJNA1233465 222745 200 1.205298 2.410596 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 309 9.34e-80   NTclustered gi|2274983416|gb|OP038912.1| 5725 g221060 i0 94.527 20.54 201 9 100 2 1 200 1444 1643 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 4108 309 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
25539717 25539717 PRJNA1233465b_S_NODE_374177_length_161_cov_0.901786_g372492_i0 PRJNA1233465 374177 161 0.901786 1.45187546 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 56.5 0.001   NTclustered gi|2794873262|ref|XM_067919119.1| 135588 g372492 i0 100 0.186335403726708 30 0 19 0 68 97 699 670 Histomonas meleagridis Collagen alpha-2(IV) chain (GO595_005833), partial mRNA blastn 30 56.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26211829 26211829 PRJNA1233465a_S_NODE_135126_length_204_cov_0.864516_g133852_i0 PRJNA1233465 135126 204 0.864516 1.76361264 Tritrichomonas augusta 5725 Parabasalia other_Eukaryota 267 5.839999999999999e-67   NTclustered gi|2274983416|gb|OP038912.1| 5725 g133852 i0 91.282 15.2549019607843 195 17 96 0 1 195 636 442 Tritrichomonas augusta isolate T1 large subunit ribosomal RNA gene, partial sequence blastn 3112 267 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas augusta
26301386 26301386 PRJNA1233465d_S_NODE_132926_length_165_cov_0.810345_g131815_i0 PRJNA1233465 132926 165 0.810345 1.33706925 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2794956749|ref|XM_067880347.1| 2049356 g131815 i0 100 12.2181818181818 30 0 18 0 59 88 4036 4007 Monocercomonoides exilis uncharacterized protein (MONOS_9812), mRNA blastn 2016 56.5 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
26360674 26360674 PRJNA1233465d_S_NODE_65551_length_217_cov_1.214286_g64440_i0 PRJNA1233465 65551 217 1.214286 2.63500062 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 54.7 0.005   NTclustered gi|123457477|ref|XM_001316431.1| 412133 g64440 i0 100 0.133640552995392 29 0 13 0 1 29 1499 1471 Trichomonas vaginalis G3 uncharacterized protein (TVAGG3_0191680), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
33069121 33069121 PRJNA1233465d_S_NODE_103117_length_180_cov_1.709924_g102006_i0 PRJNA1233465 103117 180 1.709924 3.0778632 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 42.7 0.0161   NR KAJ4460956.1 342808 g102006 i0 63 0.45 27 10 45 0 99 179 376 402 KAJ4460956.1 hypothetical protein PAPYR_2804 [Paratrimastix pyriformis] diamond 81 42.7 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
33087741 33087741 PRJNA1233465f_S_NODE_228886_length_168_cov_1.285714_g226606_i0 PRJNA1233465 228886 168 1.285714 2.15999952 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 63.5 6.08e-10   NR XP_068363861.1 1144522 g226606 i0 60.5 2.78571428571429 38 15 67.9 0 6 119 1418 1455 XP_068363861.1 uncharacterized protein TRFO_19957 [Tritrichomonas foetus] diamond 468 63.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;