RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1233465", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 8 ✖

bioproject 1

  • PRJNA1233465 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25815710 25815710 PRJNA1233465d_S_NODE_43243_length_258_cov_2.928230_g42132_i0 PRJNA1233465 43243 258 2.92823 7.5548334 Pseudomonadati 3379134 Bacteria Bacteria 156 9.89e-44   NR TLU51734.1 1095 g42132 i0 91.9 27 86 7 100 0 1 258 25 110 TLU51734.1 MAG: divalent metal cation transporter [Chlorobium sp.] diamond 6966 157 0.993630573248408 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
26359931 26359931 PRJNA1233465d_S_NODE_44223_length_256_cov_1.381643_g43112_i0 PRJNA1233465 44223 256 1.381643 3.53700608 Chlorobium sp. 1095 Bacteria Bacteria 52.8 0.023   NTclustered gi|2721715842|emb|OZ035718.1| 1095 g43112 i0 100 0.109375 28 0 11 0 104 131 4158 4185 Chlorobium sp. plfA gene, plfB gene and paleofuran BGC region, SAMEA5971621 blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
32968566 32968566 PRJNA1233465f_S_NODE_242002_length_165_cov_2.198276_g239722_i0 PRJNA1233465 242002 165 2.198276 3.6271554 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 84.3 7.61e-18   NR WP_151418929.1 1094 g239722 i0 61.1 1.94545454545455 54 21 98.2 0 164 3 129 182 WP_151418929.1 replication protein RepA [Chlorobium phaeovibrioides] diamond 321 84.3 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
33009418 33009418 PRJNA1233465f_S_NODE_206571_length_175_cov_3.563492_g204291_i0 PRJNA1233465 206571 175 3.563492 6.236111 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.00231   NR MEI7823878.1 2067991 g204291 i0 57.1 2.88 35 15 60 0 117 13 19 53 MEI7823878.1 tetratricopeptide repeat protein [Chlorobiaceae bacterium] diamond 504 45.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
33036218 33036218 PRJNA1233465f_S_NODE_119980_length_221_cov_0.889535_g117700_i0 PRJNA1233465 119980 221 0.889535 1.96587235 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 91.7 2.8e-20   NR NTV16568.1 2067991 g117700 i0 61.2 0.909502262443439 67 26 91 0 18 218 86 152 NTV16568.1 hypothetical protein [Chlorobiaceae bacterium] diamond 201 91.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
33050968 33050968 PRJNA1233465a_S_NODE_150093_length_195_cov_1.863014_g148819_i0 PRJNA1233465 150093 195 1.863014 3.6328773 Prosthecochloris sp. 290513 Bacteria Bacteria 55.5 6.39e-7   NR WP_287220674.1 290513 g148819 i0 43.1 2.75384615384615 58 33 89.2 0 185 12 1045 1102 WP_287220674.1 alginate lyase family protein [Prosthecochloris sp.] diamond 537 55.5 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp.
33053556 33053556 PRJNA1233465f_S_NODE_215557_length_172_cov_2.121951_g213277_i0 PRJNA1233465 215557 172 2.121951 3.64975572 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 47.4 3.23e-4   NR NTV16568.1 2067991 g213277 i0 52.9 0.593023255813954 34 16 59.3 0 65 166 211 244 NTV16568.1 hypothetical protein [Chlorobiaceae bacterium] diamond 102 47.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
33068671 33068671 PRJNA1233465b_S_NODE_187309_length_215_cov_1.656627_g185624_i0 PRJNA1233465 187309 215 1.656627 3.56174805 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 62.8 1.59e-9   NR NTV16568.1 2067991 g185624 i0 54.8 0.586046511627907 42 19 58.6 0 130 5 211 252 NTV16568.1 hypothetical protein [Chlorobiaceae bacterium] diamond 126 62.8 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;