RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1233465", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
33154941 33154941 PRJNA1233465d_S_NODE_99072_length_183_cov_1.514925_g97961_i0 PRJNA1233465 99072 183 1.514925 2.77231275 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 41.6 0.0454   NR XP_013754800.1 461836 g97961 i0 43.2 0.721311475409836 44 23 68.9 1 37 162 1141 1184 XP_013754800.1 uncharacterized protein AMSG_12252 [Thecamonas trahens ATCC 50062] diamond 132 41.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
33173028 33173028 PRJNA1233465f_S_NODE_183064_length_184_cov_3.400000_g180784_i0 PRJNA1233465 183064 184 3.4 6.256 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 42.7 0.0169   NR XP_013754800.1 461836 g180784 i0 43.2 0.717391304347826 44 23 68.5 1 54 179 1141 1184 XP_013754800.1 uncharacterized protein AMSG_12252 [Thecamonas trahens ATCC 50062] diamond 132 42.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;