RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1233465", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1233465 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25539206 25539206 PRJNA1233465b_S_NODE_329793_length_167_cov_1.728814_g328108_i0 PRJNA1233465 329793 167 1.728814 2.88711938 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 244 2.15e-60   NTclustered gi|470516618|ref|XM_004353053.1| 1257118 g328108 i0 93.333 0.988023952095808 165 11 99 0 3 167 181 17 Acanthamoeba castellanii str. Neff C2 domain containing protein (ACA1_071990), partial mRNA blastn 165 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26085788 26085788 PRJNA1233465d_S_NODE_120557_length_169_cov_1.700000_g119446_i0 PRJNA1233465 120557 169 1.7 2.873 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 243 7.8e-60   NTclustered gi|470484778|ref|XM_004344053.1| 1257118 g119446 i0 97.857 0.828402366863905 140 3 83 0 1 140 140 1 Acanthamoeba castellanii str. Neff cytochrome b-like heme/steroid binding domain containing protein (ACA1_054460), partial mRNA blastn 140 243 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26234448 26234448 PRJNA1233465f_S_NODE_159390_length_195_cov_2.835616_g157110_i0 PRJNA1233465 159390 195 2.835616 5.5294512 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 187 4.43e-43   NTclustered gi|470484778|ref|XM_004344053.1| 1257118 g157110 i0 98.131 0.548717948717949 107 2 55 0 89 195 1 107 Acanthamoeba castellanii str. Neff cytochrome b-like heme/steroid binding domain containing protein (ACA1_054460), partial mRNA blastn 107 187 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
33138068 33138068 PRJNA1233465e_S_NODE_118191_length_180_cov_1.412214_g116881_i0 PRJNA1233465 118191 180 1.412214 2.5419852 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.4 0.00837   NR XP_004358072.1 1257118 g116881 i0 53.7 0.683333333333333 41 19 68.3 0 123 1 29 69 XP_004358072.1 ribosomal protein L31e, putative [Acanthamoeba castellanii str. Neff] diamond 123 42.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;