RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1233317", tax_phylum = "Spirochaetota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1233317 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11250480 11250480 PRJNA1233317_S_NODE_14149_length_204_cov_4.827586_g14113_i0 PRJNA1233317 14149 204 4.827586 9.84827544 Borrelia 138 Bacteria Bacteria 52.8 0.018   NTclustered gi|2668652688|gb|CP129313.1| 142 g14113 i0 100 0.274509803921569 28 0 14 0 66 93 11655 11682 Borrelia turicatae strain BTCAM1 plasmid lp32, complete sequence blastn 56 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae
27420650 27420650 PRJNA1233317_S_NODE_1843_length_398_cov_3.666667_g1807_i0 PRJNA1233317 1843 398 3.666667 14.59333466 Treponema sp. 166 Bacteria Bacteria 125 2.04e-33   NR MBR6582735.1 166 g1807 i0 82.1 0.505025125628141 67 12 50.5 0 249 49 1 67 MBR6582735.1 GNAT family N-acetyltransferase [Treponema sp.] diamond 201 125 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
28146798 28146798 PRJNA1233317_S_NODE_6205_length_298_cov_6.096234_g6169_i0 PRJNA1233317 6205 298 6.096234 18.16677732 Treponema sp. Marseille-Q39 166 Bacteria Bacteria 65.9 5.26e-10   NR WP_187380686.1 2766703 g6169 i0 100 0.322147651006711 32 0 32.2 0 298 203 465 496 WP_187380686.1 chromosomal replication initiator protein DnaA [Treponema sp. Marseille-Q3903] diamond 96 65.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. Marseille-Q3903
31495014 31495014 PRJNA1233317_S_NODE_7216_length_284_cov_1.328889_g7180_i0 PRJNA1233317 7216 284 1.328889 3.77404476 Treponema sp. 166 Bacteria Bacteria 111 2.8300000000000004e-27   NR MBR0545975.1 166 g7180 i0 100 1.1830985915493 56 0 59.2 0 117 284 1 56 MBR0545975.1 Rpn family recombination-promoting nuclease/putative transposase [Treponema sp.] diamond 336 111 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;