RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1233317" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1233317 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30294331 30294331 PRJNA1233317_S_NODE_4552_length_327_cov_4.626866_g4516_i0 PRJNA1233317 4552 327 4.626866 15.12985182 Polyangiaceae bacterium 2268199 Bacteria Bacteria 62.8 6.45e-9   NR HMR09794.1 2268199 g4516 i0 40.2 2.20183486238532 87 46 79.8 3 3 263 214 294 HMR09794.1 endonuclease/exonuclease/phosphatase family protein [Polyangiaceae bacterium] diamond 720 62.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31558350 31558350 PRJNA1233317_S_NODE_16676_length_186_cov_3.732283_g16640_i0 PRJNA1233317 16676 186 3.732283 6.94204638 Pendulispora brunnea 2905690 Bacteria Bacteria 42 0.0162   NR WP_394850035.1 2905690 g16640 i0 41.9 0.693548387096774 43 23 69.4 1 37 165 70 110 WP_394850035.1 VOC family protein [Pendulispora brunnea] diamond 129 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;