RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1233317" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1233317 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
335702 335702 PRJNA1233317_S_NODE_8621_length_263_cov_3.186275_g8585_i0 PRJNA1233317 8621 263 3.186275 8.37990325 Viridiplantae 33090 Plants Plants 57 1.94e-7   NR KDD75683.1 1291522 g8585 i0 100 2.36121673003802 26 0 29.7 0 1 78 165 190 KDD75683.1 hypothetical protein H632_c551p0 [Helicosporidium sp. ATCC 50920] diamond 621 57 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Helicosporidium Helicosporidium sp. ATCC 50920
7989113 7989113 PRJNA1233317_S_NODE_8867_length_260_cov_2.731343_g8831_i0 PRJNA1233317 8867 260 2.731343 7.1014918 Diplosphaera sundellii 3135960 Plants Plants 388 1.59e-103   NTclustered gi|2878821371|gb|PQ563290.1| 3135960 g8831 i0 93.846 1.29615384615385 260 13 100 1 1 260 7087 6831 Diplosphaera sundellii mitochondrion, complete genome blastn 337 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Diplosphaera Diplosphaera sundellii
19461653 19461653 PRJNA1233317_S_NODE_4076_length_336_cov_3.696751_g4040_i0 PRJNA1233317 4076 336 3.696751 12.42108336 Edaphochlorella mirabilis 3083 Plants Plants 217 1.06e-51   NTclustered gi|725675941|ref|NC_025528.1| 3083 g4040 i0 84.513 56.7380952380952 226 27 65 5 118 336 113401 113625 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome blastn 19064 217 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Edaphochlorella Edaphochlorella mirabilis
27389026 27389026 PRJNA1233317_S_NODE_2083_length_389_cov_2.469697_g2047_i0 PRJNA1233317 2083 389 2.469697 9.60712133 Chlamydomonas eustigma 1157962 Plants Plants 52 9.6e-5   NR GAX76654.1 1157962 g2047 i0 46.7 0.694087403598972 90 41 68.6 3 121 387 124 207 GAX76654.1 hypothetical protein CEUSTIGMA_g4100.t1 [Chlamydomonas eustigma] diamond 270 52 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
28575759 28575759 PRJNA1233317_S_NODE_3047_length_359_cov_9.760000_g3011_i0 PRJNA1233317 3047 359 9.76 35.0384 Trebouxia 13786 Plants Plants 65.9 9.91e-10   NR KAL0029491.1 2905653 g3011 i0 57.1 1.22841225626741 49 21 40.9 0 2 148 350 398 KAL0029491.1 hypothetical protein WJX77_011613 [Trebouxia sp. C0004] diamond 441 65.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0004
30326067 30326067 PRJNA1233317_S_NODE_13632_length_209_cov_1.626667_g13596_i0 PRJNA1233317 13632 209 1.626667 3.39973403 Micractinium conductrix 554055 Plants Plants 58.5 6.42e-8   NR PSC69493.1 554055 g13596 i0 49.2 0.933014354066986 65 33 93.3 0 13 207 809 873 PSC69493.1 Acyl-coenzyme A thioesterase mitochondrial [Micractinium conductrix] diamond 195 58.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
30641326 30641326 PRJNA1233317_S_NODE_9113_length_257_cov_2.646465_g9077_i0 PRJNA1233317 9113 257 2.646465 6.80141505 Coccomyxa subellipsoidea C-169 574566 Plants Plants 93.2 2.38e-22   NR XP_005649206.1 574566 g9077 i0 79.2 1.23735408560311 53 11 61.9 0 255 97 13 65 XP_005649206.1 ribosomal protein 60S [Coccomyxa subellipsoidea C-169] diamond 318 93.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;