RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1227535" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28620394 28620394 PRJNA1227535_P_NODE_10607_length_290_cov_1.976959_g10484_i0 PRJNA1227535 10607 290 1.976959 5.7331811 Peronospora farinosa 134698 SAR_Eukaryotes SAR_Eukaryotes 102 3.88e-23   NR CAI5722522.1 134698 g10484 i0 87.5 1.15862068965517 56 7 57.9 0 288 121 319 374 CAI5722522.1 unnamed protein product [Peronospora farinosa] diamond 336 102 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora farinosa
31007804 31007804 PRJNA1227535_P_NODE_17414_length_267_cov_1.525773_g17291_i0 PRJNA1227535 17414 267 1.525773 4.07381391 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 100 1.84e-22   NR OQR90711.1 74557 g17291 i0 56.6 4.64044943820225 76 33 85.4 0 264 37 158 233 OQR90711.1 coatomer subunit gamma [Thraustotheca clavata] diamond 1239 100 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;