RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1227535" and tax_phylum = "Nitrospirota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1227535 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4162290 4162290 PRJNA1227535_P_NODE_20744_length_256_cov_1.704918_g20620_i0 PRJNA1227535 20744 256 1.704918 4.36459008 Nitrospira sp. 70125 Bacteria Bacteria 119 2.26e-22   NTclustered gi|2194428397|gb|CP092079.1| 70125 g20620 i0 78.495 0.7265625 186 36 72 4 1 184 341040 340857 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 186 119 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
15638213 15638213 PRJNA1227535_P_NODE_22593_length_252_cov_1.424581_g22469_i0 PRJNA1227535 22593 252 1.424581 3.58994412 Nitrospira sp. 70125 Bacteria Bacteria 78.7 3.77e-10   NTclustered gi|2194428397|gb|CP092079.1| 70125 g22469 i0 83.146 0.353174603174603 89 12 35 3 3 90 2472819 2472905 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 89 78.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
16912288 16912288 PRJNA1227535_P_NODE_15614_length_273_cov_1.525000_g15491_i0 PRJNA1227535 15614 273 1.525 4.16325 Nitrospira moscoviensis 42253 Bacteria Bacteria 316 8.05e-82   NTclustered gi|922305621|gb|CP011801.1| 42253 g15491 i0 91.322 0.886446886446886 242 6 83 5 47 273 3903770 3903529 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 242 316 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
19461123 19461123 PRJNA1227535_P_NODE_11256_length_288_cov_1.451163_g11133_i0 PRJNA1227535 11256 288 1.451163 4.17934944 Nitrospira sp. 70125 Bacteria Bacteria 283 8.679999999999999e-72   NTclustered gi|2194428397|gb|CP092079.1| 70125 g11133 i0 84.561 0.989583333333333 285 44 99 0 4 288 323150 323434 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 285 283 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
28007656 28007656 PRJNA1227535_P_NODE_26345_length_247_cov_1.557471_g26221_i0 PRJNA1227535 26345 247 1.557471 3.84695337 Pseudomonadati 3379134 Bacteria Bacteria 77 2.83e-14   NR MBI3606558.1 2026887 g26221 i0 45.1 3.87449392712551 82 45 99.6 0 247 2 44 125 MBI3606558.1 nucleotidyltransferase family protein [Nitrospirota bacterium] diamond 957 77 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
32064176 32064176 PRJNA1227535_P_NODE_29758_length_243_cov_0.917647_g29634_i0 PRJNA1227535 29758 243 0.917647 2.22988221 Nitrospira lenta 1436998 Bacteria Bacteria 139 1.22e-40   NR WP_121989589.1 1436998 g29634 i0 97.1 0.864197530864197 70 2 86.4 0 34 243 1 70 WP_121989589.1 type II toxin-antitoxin system VapC family toxin [Nitrospira lenta] diamond 210 139 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira lenta
32095860 32095860 PRJNA1227535_P_NODE_26558_length_247_cov_0.896552_g26434_i0 PRJNA1227535 26558 247 0.896552 2.21448344 Nitrospira sp. ST-bin5 1978765 Bacteria Bacteria 92.4 6.67e-22   NR OQW65365.1 1978765 g26434 i0 100 0.522267206477733 43 0 52.2 0 3 131 89 131 OQW65365.1 MAG: hypothetical protein BVN29_10155 [Nitrospira sp. ST-bin5] diamond 129 92.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. ST-bin5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;