RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1227535" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27893923 27893923 PRJNA1227535_P_NODE_8345_length_308_cov_3.914894_g8222_i0 PRJNA1227535 8345 308 3.914894 12.05787352 Ostertagia ostertagi 6317 Nematoda Nematoda 114 6.95e-27   NR KAK6021057.1 6317 g8222 i0 100 0.487012987012987 50 0 48.7 0 1 150 200 249 KAK6021057.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Ostertagia ostertagi] diamond 150 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
31874362 31874362 PRJNA1227535_P_NODE_29917_length_243_cov_0.917647_g29793_i0 PRJNA1227535 29917 243 0.917647 2.22988221 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 99 5.98e-22   NR KAE9550254.1 2598192 g29793 i0 75 0.691358024691358 56 14 69.1 0 173 6 216 271 KAE9550254.1 hypothetical protein FO519_006532 [Halicephalobus sp. NKZ332] diamond 168 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;