RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1227535" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15638188 15638188 PRJNA1227535_P_NODE_21313_length_254_cov_2.270718_g21189_i0 PRJNA1227535 21313 254 2.270718 5.76762372 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 470 5.37e-128   NTclustered gi|2028889048|gb|CP072378.1| 712362 g21189 i0 100 2.98425196850394 254 0 100 0 1 254 1230440 1230187 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 758 470 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221
19461157 19461157 PRJNA1227535_P_NODE_14136_length_278_cov_1.521951_g14013_i0 PRJNA1227535 14136 278 1.521951 4.23102378 Leptotrichia wadei 157687 Bacteria Bacteria 444 3.61e-120   NTclustered gi|1791353085|dbj|AP019829.2| 157687 g14013 i0 95.971 4.79496402877698 273 11 98 0 1 273 1454821 1454549 Leptotrichia wadei JCM16777 DNA, complete genome blastn 1333 444 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;