RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1227535", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26819779 26819779 PRJNA1227535_P_NODE_17841_length_265_cov_2.864583_g17718_i0 PRJNA1227535 17841 265 2.864583 7.59114495 Armatimonadota bacterium 2033014 Bacteria Bacteria 73.2 7.85e-13   NR MBC8137550.1 2033014 g17718 i0 64.1 0.724528301886792 64 21 72.5 2 69 260 1 62 MBC8137550.1 hypothetical protein [Armatimonadota bacterium] diamond 192 73.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27009366 27009366 PRJNA1227535_P_NODE_29542_length_243_cov_1.835294_g29418_i0 PRJNA1227535 29542 243 1.835294 4.45976442 Fimbriimonas sp. 1936159 Bacteria Bacteria 137 7.38e-37   NR MDR3692828.1 1936159 g29418 i0 76.3 3.95061728395062 80 19 98.8 0 3 242 54 133 MDR3692828.1 hydantoinase/carbamoylase family amidase [Fimbriimonas sp.] diamond 960 137 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
29188755 29188755 PRJNA1227535_P_NODE_5809_length_312_cov_5.271967_g5686_i0 PRJNA1227535 5809 312 5.271967 16.44853704 Capsulimonadales bacterium 2971800 Bacteria Bacteria 53.1 8.85e-7   NR MDX1931705.1 2971800 g5686 i0 67.6 0.355769230769231 37 12 35.6 0 1 111 34 70 MDX1931705.1 hypothetical protein [Capsulimonadales bacterium] diamond 111 53.1 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales     Capsulimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;