RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1227535", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8700088 8700088 PRJNA1227535_P_NODE_5327_length_322_cov_1.184739_g5204_i0 PRJNA1227535 5327 322 1.184739 3.81485958 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 259 1.66e-64   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g5204 i0 96.226 2.1055900621118 159 4 49 1 1 157 2924 3082 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 678 259 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
20173283 20173283 PRJNA1227535_P_NODE_2496_length_432_cov_2.835655_g2374_i0 PRJNA1227535 2496 432 2.835655 12.2500296 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 702 0   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2374 i0 96.056 71.4722222222222 431 17 99 0 1 431 55 485 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 30876 702 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
23287785 23287785 PRJNA1227535_P_NODE_6359_length_312_cov_3.430962_g6236_i0 PRJNA1227535 6359 312 3.430962 10.70460144 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.029   NTclustered gi|145479822|ref|XM_001425897.1| 5888 g6236 i0 100 0.0897435897435897 28 0 9 0 278 305 473 446 Paramecium tetraurelia uncharacterized protein (GSPATT00004909001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;