RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1227535", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9263445 9263445 PRJNA1227535_P_NODE_28068_length_245_cov_1.430233_g27944_i0 PRJNA1227535 28068 245 1.430233 3.50407085 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 134 1.78e-36   NR EJK48596.1 159749 g27944 i0 81.3 25.5061224489796 80 15 98 0 244 5 53 132 EJK48596.1 hypothetical protein THAOC_32592 [Thalassiosira oceanica] diamond 6249 134 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
30281510 30281510 PRJNA1227535_P_NODE_26052_length_247_cov_4.028736_g25928_i0 PRJNA1227535 26052 247 4.028736 9.95097792 root 1 Root_unresolved Root_unresolved 46.6 0.00179   NR CAB9507385.1 568900 g25928 i0 35.8 2.79352226720648 81 51 97.2 1 241 2 2213 2293 CAB9507385.1 Clustered mitochondria protein homolog [Seminavis robusta] diamond 690 46.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
31779381 31779381 PRJNA1227535_P_NODE_26717_length_247_cov_0.896552_g26593_i0 PRJNA1227535 26717 247 0.896552 2.21448344 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 100 1.78e-22   NR GKY97920.1 2872254 g26593 i0 59 1.0080971659919 83 31 97.2 1 245 6 206 288 GKY97920.1 hypothetical protein MPSEU_000750000 [Mayamaea pseudoterrestris] diamond 249 100 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;