RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1227535", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29062395 29062395 PRJNA1227535_P_NODE_12228_length_285_cov_1.136792_g12105_i0 PRJNA1227535 12228 285 1.136792 3.2398572 Methanobacterium sp. 2164 Archaea Archaea 127 6.059999999999999e-35   NR TMS40652.1 2164 g12105 i0 81.3 1.57894736842105 75 14 78.9 0 59 283 1 75 TMS40652.1 MAG: hypothetical protein FGO69_10600 [Methanobacterium sp.] diamond 450 127 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
31621298 31621298 PRJNA1227535_P_NODE_22716_length_252_cov_0.871508_g22592_i0 PRJNA1227535 22716 252 0.871508 2.19620016 Methanobacterium sp. 2164 Archaea Archaea 75.1 1.32e-15   NR HEY0196787.1 2164 g22592 i0 70.5 0.928571428571429 78 23 92.9 0 251 18 5 82 HEY0196787.1 hypothetical protein [Methanobacterium sp.] diamond 234 75.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;