RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1227535", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1227535 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4162355 4162355 PRJNA1227535_P_NODE_24424_length_250_cov_0.881356_g24300_i0 PRJNA1227535 24424 250 0.881356 2.20339 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 237 5.82e-58   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g24300 i0 84.362 73.076 243 36 97 2 3 244 176686 176927 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 18269 237 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
18898626 18898626 PRJNA1227535_P_NODE_9855_length_293_cov_1.931818_g9732_i0 PRJNA1227535 9855 293 1.931818 5.66022674 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 160 2.2e-44   NR HEX8299725.1 2838334 g9732 i0 79.8 2.02730375426621 99 18 99.3 1 293 3 197 295 HEX8299725.1 hypothetical protein [Rubricoccaceae bacterium] diamond 594 160 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
23287671 23287671 PRJNA1227535_P_NODE_29279_length_244_cov_0.912281_g29155_i0 PRJNA1227535 29279 244 0.912281 2.22596564 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 176 1.25e-39   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g29155 i0 80.87 0.942622950819672 230 39 94 4 12 240 1963096 1962871 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 230 176 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
26964898 26964898 PRJNA1227535_P_NODE_27742_length_245_cov_3.168605_g27618_i0 PRJNA1227535 27742 245 3.168605 7.76308225 Rhodothermales 1853224 Bacteria Bacteria 46.6 0.00157   NR NNF59510.1 2026787 g27618 i0 90.9 1.3469387755102 22 2 26.9 0 68 3 1 22 NNF59510.1 methylenetetrahydrofolate reductase [NAD(P)H] [Rhodothermaceae bacterium] diamond 330 46.6 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
27167416 27167416 PRJNA1227535_P_NODE_33462_length_223_cov_4.313333_g33338_i0 PRJNA1227535 33462 223 4.313333 9.61873259 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 126 3.5799999999999997e-32   NR HEX8297747.1 2838334 g33338 i0 81.1 0.995515695067265 74 14 99.6 0 222 1 287 360 HEX8297747.1 hypothetical protein [Rubricoccaceae bacterium] diamond 222 126 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
29567314 29567314 PRJNA1227535_P_NODE_26430_length_247_cov_1.287356_g26306_i0 PRJNA1227535 26430 247 1.287356 3.17976932 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 94.7 5.36e-23   NR HEX8384925.1 2838334 g26306 i0 76.1 0.862348178137652 71 17 86.2 0 214 2 1 71 HEX8384925.1 hypothetical protein [Rubricoccaceae bacterium] diamond 213 94.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;