RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1227535", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1227535 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2886446 2886446 PRJNA1227535_P_NODE_743_length_702_cov_3.014308_g636_i0 PRJNA1227535 743 702 3.014308 21.16044216 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 965 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g636 i0 98.711 69.7279202279202 543 7 77 0 1 543 2420 2962 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 48949 965 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7988653 7988653 PRJNA1227535_P_NODE_18587_length_263_cov_1.642105_g18463_i0 PRJNA1227535 18587 263 1.642105 4.31873615 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 440 4.389999999999998e-119   NTclustered gi|909719645|gb|KT185625.1| 5778 g18463 i0 96.958 1.81368821292776 263 7 99 1 2 263 7093 6831 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 477 440 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7988843 7988843 PRJNA1227535_P_NODE_29207_length_244_cov_0.912281_g29083_i0 PRJNA1227535 29207 244 0.912281 2.22596564 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 162 1.6599999999999998e-45   NR YP_003540812.1 5778 g29083 i0 97.5 0.995901639344262 81 2 99.6 0 244 2 239 319 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 243 162 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20173279 20173279 PRJNA1227535_P_NODE_24556_length_249_cov_2.613636_g24432_i0 PRJNA1227535 24556 249 2.613636 6.50795364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 459 1.1399999999999998e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g24432 i0 100 39.6385542168675 248 0 99 0 2 249 1219 972 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9870 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;