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contig_metadata

10 rows where bioproject = "PRJNA1227535" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA1227535 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2886446 2886446 PRJNA1227535_P_NODE_743_length_702_cov_3.014308_g636_i0 PRJNA1227535 743 702 3.014308 21.16044216 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 965 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g636 i0 98.711 69.7279202279202 543 7 77 0 1 543 2420 2962 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 48949 965 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6712889 6712889 PRJNA1227535_P_NODE_14006_length_278_cov_2.278049_g13883_i0 PRJNA1227535 14006 278 2.278049 6.33297622 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 143 1.48e-29   NTclustered gi|470381695|ref|XM_004333750.1| 1257118 g13883 i0 91.346 0.37410071942446 104 9 37 0 158 261 712 815 Acanthamoeba castellanii str. Neff Ceramidase (ACA1_362720), partial mRNA blastn 104 143 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
7988653 7988653 PRJNA1227535_P_NODE_18587_length_263_cov_1.642105_g18463_i0 PRJNA1227535 18587 263 1.642105 4.31873615 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 440 4.389999999999998e-119   NTclustered gi|909719645|gb|KT185625.1| 5778 g18463 i0 96.958 1.81368821292776 263 7 99 1 2 263 7093 6831 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 477 440 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7988843 7988843 PRJNA1227535_P_NODE_29207_length_244_cov_0.912281_g29083_i0 PRJNA1227535 29207 244 0.912281 2.22596564 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 162 1.6599999999999998e-45   NR YP_003540812.1 5778 g29083 i0 97.5 0.995901639344262 81 2 99.6 0 244 2 239 319 YP_003540812.1 ATP synthase F1 subunit alpha [Vermamoeba vermiformis] diamond 243 162 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9263329 9263329 PRJNA1227535_P_NODE_21148_length_255_cov_1.554945_g21024_i0 PRJNA1227535 21148 255 1.554945 3.96510975 Vannella septentrionalis 197531 Discosea other_Eukaryota 398 2.5799999999999994e-106   NTclustered gi|300078499|gb|GU001161.1| 197531 g21024 i0 94.595 72.9019607843137 259 10 100 3 1 255 1636 1894 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18590 398 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
13088875 13088875 PRJNA1227535_P_NODE_15911_length_272_cov_1.567839_g15788_i0 PRJNA1227535 15911 272 1.567839 4.26452208 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 392 1.2899999999999997e-104   NTclustered gi|470525250|ref|XM_004356530.1| 1257118 g15788 i0 92.647 1 272 20 100 0 1 272 1069 1340 Acanthamoeba castellanii str. Neff gelation factor, putative (ACA1_173100), partial mRNA blastn 272 392 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
14364349 14364349 PRJNA1227535_P_NODE_25292_length_248_cov_3.337143_g25168_i0 PRJNA1227535 25292 248 3.337143 8.27611464 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 226 1.2499999999999999e-54   NTclustered gi|470465440|ref|XM_004341569.1| 1257118 g25168 i0 84.274 1.15322580645161 248 21 98 6 7 248 1053 818 Acanthamoeba castellanii str. Neff Ser/Thr phosphatase family protein (ACA1_269730), partial mRNA blastn 286 226 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16349512 16349512 PRJNA1227535_P_NODE_30313_length_242_cov_2.366864_g30189_i0 PRJNA1227535 30313 242 2.366864 5.72781088 root 1 Root_unresolved Root_unresolved 425 1.11e-114   NTclustered gi|909719646|gb|KT185626.1| 5755 g30189 i0 98.354 60.7727272727273 243 3 100 1 1 242 3957 3715 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14707 425 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20173279 20173279 PRJNA1227535_P_NODE_24556_length_249_cov_2.613636_g24432_i0 PRJNA1227535 24556 249 2.613636 6.50795364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 459 1.1399999999999998e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g24432 i0 100 39.6385542168675 248 0 99 0 2 249 1219 972 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9870 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30578029 30578029 PRJNA1227535_P_NODE_12173_length_285_cov_1.353774_g12050_i0 PRJNA1227535 12173 285 1.353774 3.8582559 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 74.7 4.52e-14   NR XP_004333702.1 1257118 g12050 i0 40.9 0.978947368421053 93 54 96.8 1 7 282 42 134 XP_004333702.1 glutathione transferase family protein [Acanthamoeba castellanii str. Neff] diamond 279 74.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;