RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1226487" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1226487 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18186504 18186504 PRJNA1226487_P_NODE_47475_length_276_cov_29.625616_g47373_i0 PRJNA1226487 47475 276 29.625616 81.76670016 Entamoeba histolytica 5759 Evosea other_Eukaryota 239 1.82e-58   NTclustered gi|467633|emb|Z29969.1| 5759 g47373 i0 82.971 47.6920289855072 276 36 98 7 1 271 1642 1373 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 13163 239 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
28304415 28304415 PRJNA1226487_P_NODE_1126_length_922_cov_5.439340_g1051_i0 PRJNA1226487 1126 922 5.43934 50.1507148 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 160 5.25e-40   NR KAH3743581.1 1580589 g1051 i0 36.4 1.72451193058568 264 163 85.9 1 909 118 840 1098 KAH3743581.1 alpha-actinin A [Pelomyxa schiedti] diamond 1590 160 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31494990 31494990 PRJNA1226487_P_NODE_516_length_1182_cov_8.820559_g6_i1 PRJNA1226487 516 1182 8.820559 104.25900738 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 186 1.2999999999999998e-47   NR KAH3762577.1 1580589 g6 i1 36.1 1.59137055837563 319 199 79.7 2 152 1093 1120 1438 KAH3762577.1 alpha-actinin A [Pelomyxa schiedti] diamond 1881 186 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;