RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1226487" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1226487 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1609709 1609709 PRJNA1226487_P_NODE_73422_length_244_cov_2.385965_g73320_i0 PRJNA1226487 73422 244 2.385965 5.8217546 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 337 5.429999999999998e-88   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g73320 i0 92.083 6.00409836065574 240 17 98 2 1 239 308 70 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1465 337 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
2885849 2885849 PRJNA1226487_P_NODE_38383_length_291_cov_11.403670_g38281_i0 PRJNA1226487 38383 291 11.40367 33.1846797 Wilbertia typica 655661 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.42e-15   NTclustered gi|1418575077|gb|MH577585.1| 655661 g38281 i0 90.411 19.9553264604811 73 5 25 2 70 141 112 183 Wilbertia typica isolate PXM100628 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 5807 95.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Eurystomatellidae Wilbertia Wilbertia typica
8699833 8699833 PRJNA1226487_P_NODE_42027_length_285_cov_1.452830_g41925_i0 PRJNA1226487 42027 285 1.45283 4.1405655 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|2558939|gb|AF025312.1|AF025312 5911 g41925 i0 96.667 0.645614035087719 30 1 11 0 239 268 2810 2839 Tetrahymena thermophila cytoplasmic dynein heavy chain 1a gene, partial cds blastn 184 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27830820 27830820 PRJNA1226487_P_NODE_74984_length_243_cov_1.811765_g74882_i0 PRJNA1226487 74984 243 1.811765 4.40258895 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 78.6 9.43e-15   NR CDW83970.1 5949 g74882 i0 66.1 0.691358024691358 56 19 69.1 0 1 168 210 265 CDW83970.1 snf2 family dna-dependent atpase [Stylonychia lemnae] diamond 168 78.6 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
28083371 28083371 PRJNA1226487_P_NODE_81465_length_227_cov_3.961039_g81363_i0 PRJNA1226487 81465 227 3.961039 8.99155853 Paramecium sonneborni 65129 SAR_Eukaryotes SAR_Eukaryotes 57.4 2.09e-7   NR CAD8058350.1 65129 g81363 i0 39.1 1.62555066079295 64 39 84.6 0 9 200 806 869 CAD8058350.1 unnamed protein product [Paramecium sonneborni] diamond 369 57.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
28133935 28133935 PRJNA1226487_P_NODE_4065_length_597_cov_7.368321_g3973_i0 PRJNA1226487 4065 597 7.368321 43.98887637 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 152 1.51e-43   NR CAD8061965.1 5886 g3973 i0 60.2 2.47738693467337 128 49 63.3 1 40 417 1 128 CAD8061965.1 unnamed protein product [Paramecium primaurelia] diamond 1479 153 0.993464052287582 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
28430883 28430883 PRJNA1226487_P_NODE_43306_length_283_cov_1.466667_g43204_i0 PRJNA1226487 43306 283 1.466667 4.15066761 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 135 2.26e-34   NR CDW75137.1 5949 g43204 i0 77.7 0.996466431095406 94 21 99.6 0 282 1 1843 1936 CDW75137.1 dynein heavy chain axonemal [Stylonychia lemnae] diamond 282 135 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30389121 30389121 PRJNA1226487_P_NODE_73633_length_244_cov_1.801170_g73531_i0 PRJNA1226487 73633 244 1.80117 4.3948548 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.41e-15   NR CDW86533.1 5949 g73531 i0 71.2 0.639344262295082 52 15 63.9 0 242 87 3390 3441 CDW86533.1 UNKNOWN [Stylonychia lemnae] diamond 156 80.9 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
31400122 31400122 PRJNA1226487_P_NODE_49096_length_274_cov_1.532338_g48994_i0 PRJNA1226487 49096 274 1.532338 4.19860612 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.62e-5   NR CDW84829.1 5949 g48994 i0 63.2 0.416058394160584 38 14 41.6 0 18 131 147 184 CDW84829.1 UNKNOWN [Stylonychia lemnae] diamond 114 52.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;