contig_metadata
5 rows where bioproject = "PRJNA1226487", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5438329 | 5438329 | PRJNA1226487_P_NODE_81825_length_226_cov_2.013072_g81723_i0 | PRJNA1226487 | 81825 | 226 | 2.013072 | 4.54954272 | Campylobacter geochelonis | 1780362 | Bacteria | Bacteria | 54.7 | 0.006 | NTclustered | gi|1847322497|gb|CP053844.1| | 1780362 | g81723 | i0 | 92.308 | 0.172566371681416 | 39 | 1 | 17 | 2 | 91 | 129 | 2096805 | 2096841 | Campylobacter geochelonis strain LMG 29375 chromosome, complete genome | blastn | 39 | 54.7 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter geochelonis | ||
| 7988463 | 7988463 | PRJNA1226487_P_NODE_74587_length_244_cov_0.900585_g74485_i0 | PRJNA1226487 | 74587 | 244 | 0.900585 | 2.1974274 | Campylobacter rectus | 203 | Bacteria | Bacteria | 368 | 1.92e-97 | NTclustered | gi|1622745323|gb|CP012543.1| | 203 | g74485 | i0 | 93.852 | 12.7131147540984 | 244 | 15 | 100 | 0 | 1 | 244 | 1668880 | 1669123 | Campylobacter rectus strain ATCC 33238, complete genome | blastn | 3102 | 368 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter rectus | ||
| 20736550 | 20736550 | PRJNA1226487_P_NODE_82057_length_224_cov_4.437086_g81955_i0 | PRJNA1226487 | 82057 | 224 | 4.437086 | 9.93907264 | Campylobacter ureolyticus | 827 | Bacteria | Bacteria | 407 | 3.69e-109 | NTclustered | gi|1966876394|gb|CP068487.1| | 827 | g81955 | i0 | 100 | 3.92857142857143 | 220 | 0 | 98 | 0 | 1 | 220 | 1341984 | 1341765 | Campylobacter ureolyticus strain FDAARGOS_1102 chromosome | blastn | 880 | 407 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter ureolyticus | ||
| 27786637 | 27786637 | PRJNA1226487_P_NODE_76544_length_242_cov_1.822485_g76442_i0 | PRJNA1226487 | 76544 | 242 | 1.822485 | 4.4104137 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 59.3 | 2.31e-8 | NR | MCB4773506.1 | 1969726 | g76442 | i0 | 39.4 | 8.81404958677686 | 71 | 43 | 88 | 0 | 10 | 222 | 52 | 122 | MCB4773506.1 DUF1891 domain-containing protein [Sulfurovum sp.] | diamond | 2133 | 59.3 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Sulfurovaceae | Sulfurovum | Sulfurovum sp. | ||
| 30249739 | 30249739 | PRJNA1226487_P_NODE_7232_length_494_cov_3.807601_g7135_i0 | PRJNA1226487 | 7232 | 494 | 3.807601 | 18.80954894 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 123 | 1e-31 | NR | GMT39229.1 | 56877 | g7135 | i0 | 45.5 | 7.63967611336032 | 156 | 74 | 94.7 | 4 | 474 | 7 | 68 | 212 | GMT39229.1 glutathione S-transferase family protein [Helicobacter bizzozeronii] | diamond | 3774 | 124 | 0.991935483870968 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter bizzozeronii |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;