RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1226487", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29661708 29661708 PRJNA1226487_P_NODE_1810_length_777_cov_3.673295_g1727_i0 PRJNA1226487 1810 777 3.673295 28.54150215 Kappamyces sp. JEL 2040833 Fungi Fungi 221 1.3199999999999998e-66   NR KAJ3302397.1 2724216 g1727 i0 46.7 2.74131274131274 240 124 92.7 1 771 52 125 360 KAJ3302397.1 Retinol dehydrogenase 12 [Kappamyces sp. JEL0829] diamond 2130 221 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0829
30104233 30104233 PRJNA1226487_P_NODE_5852_length_529_cov_2.241228_g5758_i0 PRJNA1226487 5852 529 2.241228 11.85609612 Hyaloraphidium curvatum 82268 Fungi Fungi 108 3.3299999999999998e-25   NR KAI9023467.1 82268 g5758 i0 36.2 0.862003780718336 152 95 85.1 2 21 470 136 287 KAI9023467.1 dienelactone hydrolase family-domain-containing protein [Hyaloraphidium curvatum] diamond 456 108 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;