RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1226487", tax_clade = "core chlorophytes" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 7 ✖

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1226487 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8699869 8699869 PRJNA1226487_P_NODE_79687_length_237_cov_16.024390_g79585_i0 PRJNA1226487 79687 237 16.02439 37.9778043 Eukaryota 2759 Plants Plants 134 7.38e-27   NTclustered gi|6120022|gb|AF183482.1| 3088 g79585 i0 88.393 49.4261603375527 112 11 47 2 38 148 1476 1366 Tetradesmus obliquus culture SAG:276-3a strain SAG 276-3a 28S ribosomal RNA gene, partial sequence blastn 11714 135 0.992592592592593 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
10538801 10538801 PRJNA1226487_P_NODE_40269_length_288_cov_1.432558_g40167_i0 PRJNA1226487 40269 288 1.432558 4.12576704 Treubaria triappendiculata 1755147 Plants Plants 52.8 0.027   NTclustered gi|959124034|ref|NC_028578.1| 1755147 g40167 i0 100 0.0972222222222222 28 0 10 0 13 40 35555 35582 Treubaria triappendiculata culture-collection SAG:38.83 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Treubariaceae Treubaria Treubaria triappendiculata
22011772 22011772 PRJNA1226487_P_NODE_77658_length_241_cov_18.690476_g77556_i0 PRJNA1226487 77658 241 18.690476 45.04404716 Eremosphaera viridis 163307 Plants Plants 298 2.52e-76   NTclustered gi|371782095|emb|HE610127.1| 163307 g77556 i0 89.669 99.7551867219917 242 14 98 9 5 239 2360 2597 Eremosphaera viridis 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain CCAC 0071 blastn 24041 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Oocystaceae Eremosphaera Eremosphaera viridis
27439430 27439430 PRJNA1226487_P_NODE_82163_length_221_cov_4.243243_g82061_i0 PRJNA1226487 82163 221 4.243243 9.37756703 Eukaryota 2759 Plants Plants 57.8 1.31e-7   NR XP_011399793.1 3075 g82061 i0 73 8.13122171945701 37 10 50.2 0 7 117 301 337 XP_011399793.1 Cytochrome c peroxidase, mitochondrial [Auxenochlorella protothecoides] diamond 1797 57.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27736461 27736461 PRJNA1226487_P_NODE_79924_length_236_cov_3.834356_g79822_i0 PRJNA1226487 79924 236 3.834356 9.04908016 Monoraphidium minutum 39955 Plants Plants 54.7 2.08e-6   NR KAI8463591.1 39955 g79822 i0 71.4 4.27118644067797 35 10 44.5 0 1 105 677 711 KAI8463591.1 MAG: hypothetical protein J3K34DRAFT_494941 [Monoraphidium minutum] diamond 1008 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
29440838 29440838 PRJNA1226487_P_NODE_67790_length_248_cov_2.382857_g67688_i0 PRJNA1226487 67790 248 2.382857 5.90948536 [Myrmecia] bisecta 41462 Plants Plants 50.8 8.01e-6   NR KAK9811884.1 41462 g67688 i0 44.2 0.629032258064516 52 27 62.9 1 3 158 41 90 KAK9811884.1 hypothetical protein WJX72_011786 [[Myrmecia] bisecta] diamond 156 50.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
32444237 32444237 PRJNA1226487_P_NODE_46519_length_278_cov_1.502439_g46417_i0 PRJNA1226487 46519 278 1.502439 4.17678042 Raphidocelis subcapitata 307507 Plants Plants 76.3 3.63e-14   NR GBF88570.1 307507 g46417 i0 58 0.539568345323741 50 21 54 0 162 13 106 155 GBF88570.1 glyoxal reductase-like [Raphidocelis subcapitata] diamond 150 76.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;