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contig_metadata

25 rows where bioproject = "PRJNA1226487", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 25 ✖

tax_clade 1

  • Sar · 25 ✖

bioproject 1

  • PRJNA1226487 · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2885839 2885839 PRJNA1226487_P_NODE_31343_length_313_cov_1.745833_g31241_i0 PRJNA1226487 31343 313 1.745833 5.46445729 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 153 2.28e-41   NR OQS03226.1 74557 g31241 i0 73.5 4.87859424920128 102 26 96.8 1 11 313 173 274 OQS03226.1 glucose-6-phosphate isomerase [Thraustotheca clavata] diamond 1527 154 0.993506493506494 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
4162110 4162110 PRJNA1226487_P_NODE_984_length_963_cov_3.234831_g914_i0 PRJNA1226487 984 963 3.234831 31.15142253 root 1 Root_unresolved Root_unresolved 587 3.99e-205   NR KAG3217446.1 29920 g914 i0 91.4 10.7601246105919 314 27 97.8 0 961 20 363 676 KAG3217446.1 Eukaryotic initiation factor [Phytophthora cactorum] diamond 10362 592 0.991554054054054 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
8699838 8699838 PRJNA1226487_P_NODE_50667_length_271_cov_6.151515_g50565_i0 PRJNA1226487 50667 271 6.151515 16.67060565 root 1 Root_unresolved Root_unresolved 501 2.05e-137   NTclustered gi|166046604|emb|CU367721.1| 100861 g50565 i0 100 89.4612546125461 271 0 100 0 1 271 259 529 Aphanomyces euteiches cDNA blastn 24244 501 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13088543 13088543 PRJNA1226487_P_NODE_16211_length_384_cov_5.411576_g16109_i0 PRJNA1226487 16211 384 5.411576 20.78045184 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 149 8.429999999999998e-39   NR KAJ8527431.1 4785 g16109 i0 78 4.109375 100 20 78.1 1 83 382 36 133 KAJ8527431.1 hypothetical protein ON010_g14832 [Phytophthora cinnamomi] diamond 1578 150 0.993333333333333 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13088767 13088767 PRJNA1226487_P_NODE_911_length_988_cov_3.147541_g842_i0 PRJNA1226487 911 988 3.147541 31.09770508 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 409 1.4299999999999999e-139   NR XP_024573126.1 4781 g842 i0 62.3 7.67307692307692 326 107 98.7 4 976 2 12 322 XP_024573126.1 nucleotide-binding protein 1 [Plasmopara halstedii] diamond 7581 412 0.992718446601942 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
14363900 14363900 PRJNA1226487_P_NODE_3232_length_646_cov_11.668412_g3141_i0 PRJNA1226487 3232 646 11.668412 75.37794152 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 300 2.08e-76   NTclustered gi|325196715|emb|FR827504.1| 890382 g3141 i0 95.238 0.292569659442724 189 9 29 0 87 275 1 189 Albugo laibachii Nc14, genomic contig CONTIG_4671_NC14_v4_189_105 blastn 189 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15637806 15637806 PRJNA1226487_P_NODE_3293_length_642_cov_4.360281_g3202_i0 PRJNA1226487 3293 642 4.360281 27.99300402 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 247 3.63e-76   NR KAH9108398.1 100861 g3202 i0 83.7 3.29439252336449 141 23 65.9 0 638 216 340 480 KAH9108398.1 hypothetical protein AeMF1_016428 [Aphanomyces euteiches] diamond 2115 249 0.991967871485944 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22011691 22011691 PRJNA1226487_P_NODE_5058_length_554_cov_5.407484_g4965_i0 PRJNA1226487 5058 554 5.407484 29.95746136 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 221 5.64e-63   NR XP_067817212.1 4779 g4965 i0 64.5 23.2148014440433 152 53 82.3 1 552 97 916 1066 XP_067817212.1 hypothetical protein CCR75_001963 [Bremia lactucae] diamond 12861 223 0.991031390134529 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
26964897 26964897 PRJNA1226487_P_NODE_80422_length_234_cov_2.012422_g80320_i0 PRJNA1226487 80422 234 2.012422 4.70906748 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 108 2.54e-28   NR KAG1703166.1 4784 g80320 i0 72.2 5.52564102564103 72 20 92.3 0 222 7 30 101 KAG1703166.1 hypothetical protein DVH05_008077 [Phytophthora capsici] diamond 1293 109 0.990825688073395 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
27515126 27515126 PRJNA1226487_P_NODE_33043_length_307_cov_6.414530_g32941_i0 PRJNA1226487 33043 307 6.41453 19.6926071 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 169 4.2e-46   NR OQS00430.1 74557 g32941 i0 75.2 95.7459283387622 101 25 98.7 0 304 2 1157 1257 OQS00430.1 pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Thraustotheca clavata] diamond 29394 169 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
28272701 28272701 PRJNA1226487_P_NODE_10686_length_437_cov_3.920330_g10586_i0 PRJNA1226487 10686 437 3.92033 17.1318421 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 52.8 8.69e-5   NR XP_009837118.1 112090 g10586 i0 31.6 0.782608695652174 114 58 78.3 3 8 349 303 396 XP_009837118.1 hypothetical protein H257_11789 [Aphanomyces astaci] diamond 342 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28620386 28620386 PRJNA1226487_P_NODE_5467_length_540_cov_2.188437_g5374_i0 PRJNA1226487 5467 540 2.188437 11.8175598 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 57 8.33e-6   NR CCA18228.1 890382 g5374 i0 45.1 0.394444444444444 71 34 38.9 2 266 475 1575 1641 CCA18228.1 nuclear pore complex protein putative [Albugo laibachii Nc14] diamond 213 57 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
28702210 28702210 PRJNA1226487_P_NODE_1167_length_908_cov_3.094611_g1092_i0 PRJNA1226487 1167 908 3.094611 28.09906788 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 235 8.81e-68   NR TMW66537.1 41045 g1092 i0 42.6 6.02312775330396 303 160 99.8 2 3 908 228 517 TMW66537.1 hypothetical protein Poli38472_004302 [Pythium oligandrum] diamond 5469 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29775490 29775490 PRJNA1226487_P_NODE_211_length_1571_cov_2.357810_g177_i0 PRJNA1226487 211 1571 2.35781 37.0411951 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 288 5.66e-83   NR KAJ8527496.1 4785 g177 i0 33.8 8.21323997453851 536 303 94.3 9 3 1484 119 644 KAJ8527496.1 hypothetical protein ON010_g14767 [Phytophthora cinnamomi] diamond 12903 288 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30072663 30072663 PRJNA1226487_P_NODE_27792_length_325_cov_3.781746_g27690_i0 PRJNA1226487 27792 325 3.781746 12.2906745 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 96.7 9.42e-23   NR TYZ64398.1 1485010 g27690 i0 47.3 4.29230769230769 93 46 84 2 320 48 70 161 TYZ64398.1 hypothetical protein PybrP1_012361 [[Pythium] brassicae (nom. inval.)] diamond 1395 96.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
30376307 30376307 PRJNA1226487_P_NODE_792_length_1033_cov_10.064583_g725_i0 PRJNA1226487 792 1033 10.064583 103.96714239 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 396 6.759999999999998e-134   NR TMW59772.1 41045 g725 i0 59.3 6.25847047434656 307 121 89.2 1 68 988 65 367 TMW59772.1 hypothetical protein Poli38472_004841 [Pythium oligandrum] diamond 6465 397 0.997481108312343 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30407775 30407775 PRJNA1226487_P_NODE_793_length_1033_cov_8.782292_g725_i1 PRJNA1226487 793 1033 8.782292 90.72107636 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 393 7.799999999999999e-133   NR TMW59772.1 41045 g725 i1 59 6.25847047434656 307 122 89.2 1 966 46 65 367 TMW59772.1 hypothetical protein Poli38472_004841 [Pythium oligandrum] diamond 6465 394 0.99746192893401 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
30691761 30691761 PRJNA1226487_P_NODE_5453_length_540_cov_5.554604_g5360_i0 PRJNA1226487 5453 540 5.554604 29.9948616 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 186 2.09e-51   NR DAZ95743.1 4803 g5360 i0 49.1 14.7666666666667 175 88 97.2 1 526 2 518 691 DAZ95743.1 TPA: hypothetical protein N0F65_006391 [Lagenidium giganteum] diamond 7974 186 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
30944712 30944712 PRJNA1226487_P_NODE_2994_length_664_cov_3.676819_g2903_i0 PRJNA1226487 2994 664 3.676819 24.41407816 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 94.7 2.39e-18   NR XP_067820601.1 4779 g2903 i0 34.9 6.80873493975904 166 95 73.2 4 496 11 646 802 XP_067820601.1 hypothetical protein CCR75_003513 [Bremia lactucae] diamond 4521 94.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
31608518 31608518 PRJNA1226487_P_NODE_17756_length_374_cov_1.637874_g17654_i0 PRJNA1226487 17756 374 1.637874 6.12564876 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 87 4.74e-17   NR DAZ98651.1 4803 g17654 i0 63 3.4572192513369 54 20 43.3 0 367 206 481 534 DAZ98651.1 TPA: hypothetical protein N0F65_000846 [Lagenidium giganteum] diamond 1293 87 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31716251 31716251 PRJNA1226487_P_NODE_16737_length_380_cov_7.781759_g16635_i0 PRJNA1226487 16737 380 7.781759 29.5706842 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 94.4 5.93e-20   NR TMW62123.1 41045 g16635 i0 60.9 3.90789473684211 69 27 54.5 0 9 215 302 370 TMW62123.1 hypothetical protein Poli38472_009616 [Pythium oligandrum] diamond 1485 94.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
31988050 31988050 PRJNA1226487_P_NODE_47618_length_276_cov_2.206897_g47516_i0 PRJNA1226487 47618 276 2.206897 6.09103572 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 51.2 5.75e-5   NR KAK1945754.1 4793 g47516 i0 39.1 2.70652173913043 92 48 93.5 3 269 12 436 525 KAK1945754.1 Calcium-dependent protein kinase 3 [Phytophthora citrophthora] diamond 747 51.6 0.992248062015504 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
32273090 32273090 PRJNA1226487_P_NODE_47518_length_276_cov_4.280788_g47416_i0 PRJNA1226487 47518 276 4.280788 11.81497488 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 152 2.41e-44   NR XP_024584861.1 4781 g47416 i0 76.4 12.5760869565217 89 21 96.7 0 271 5 75 163 XP_024584861.1 adp-ribosylation factor [Plasmopara halstedii] diamond 3471 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
32475768 32475768 PRJNA1226487_P_NODE_12419_length_417_cov_3.732558_g12319_i0 PRJNA1226487 12419 417 3.732558 15.56476686 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 62.8 2.36e-8   NR TMW61112.1 41045 g12319 i0 39.2 0.733812949640288 102 58 71.9 3 14 313 80 179 TMW61112.1 hypothetical protein Poli38472_013575 [Pythium oligandrum] diamond 306 62.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
32589363 32589363 PRJNA1226487_P_NODE_1119_length_924_cov_1.990599_g1044_i0 PRJNA1226487 1119 924 1.990599 18.39313476 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 88.2 2.05e-15   NR OWY97301.1 4795 g1044 i0 48 1.80519480519481 102 44 31.5 2 452 742 315 412 OWY97301.1 60S ribosomal export protein nmd3 [Phytophthora megakarya] diamond 1668 88.6 0.99548532731377 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;