RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1226487", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29093969 29093969 PRJNA1226487_P_NODE_25488_length_334_cov_5.409962_g25386_i0 PRJNA1226487 25488 334 5.409962 18.06927308 Chlamydiota bacterium 2081524 Bacteria Bacteria 44.7 0.0146   NR MCX6994980.1 2081524 g25386 i0 33.3 0.673652694610778 75 29 67.4 2 331 107 126 179 MCX6994980.1 HAD domain-containing protein [Chlamydiota bacterium] diamond 225 44.7 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32286085 32286085 PRJNA1226487_P_NODE_81999_length_225_cov_6.078947_g81897_i0 PRJNA1226487 81999 225 6.078947 13.67763075 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 84.7 1.78e-19   NR WP_032124023.1 389348 g81897 i0 75.5 4.01333333333333 49 12 65.3 0 76 222 1 49 WP_032124023.1 CsbD family protein [Candidatus Protochlamydia naegleriophila] diamond 903 84.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;