RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1226487", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1226487 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1046789 1046789 PRJNA1226487_P_NODE_49021_length_274_cov_1.532338_g48919_i0 PRJNA1226487 49021 274 1.532338 4.19860612 Strongyloides 6247 Nematoda Nematoda 58.4 5.41e-4   NTclustered gi|1376151849|ref|XM_024644425.1| 34506 g48919 i0 92.683 1.02919708029197 41 2 15 1 233 272 959 919 Strongyloides ratti Hypothetical protein (SRAE_X000012000), partial mRNA blastn 282 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23287158 23287158 PRJNA1226487_P_NODE_23519_length_343_cov_1.425926_g23417_i0 PRJNA1226487 23519 343 1.425926 4.89092618 Caenorhabditis 6237 Nematoda Nematoda 171 1.31e-51   NR PIC37921.1 1611254 g23417 i0 65.8 19.8104956268222 114 39 99.7 0 1 342 42 155 PIC37921.1 hypothetical protein B9Z55_010100 [Caenorhabditis nigoni] diamond 6795 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
25272975 25272975 PRJNA1226487_P_NODE_40820_length_287_cov_1.485981_g40718_i0 PRJNA1226487 40820 287 1.485981 4.26476547 Caenorhabditis 6237 Nematoda Nematoda 296 1.11e-75   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g40718 i0 86.022 96.390243902439 279 35 97 4 11 287 1018 1294 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 27664 298 0.993288590604027 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;