RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1226487", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1226487 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11813604 11813604 PRJNA1226487_P_NODE_4910_length_559_cov_22.164609_g4817_i0 PRJNA1226487 4910 559 22.164609 123.90016431 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 636 1.1999999999999995e-177   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g4817 i0 87.59 47.4311270125224 556 60 99 8 9 559 3 554 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 26514 636 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
27135537 27135537 PRJNA1226487_P_NODE_51282_length_270_cov_7.913706_g51180_i0 PRJNA1226487 51282 270 7.913706 21.3670062 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 1.0099999999999999e-32   NR XP_004367841.1 1257118 g51180 i0 73.9 0.977777777777778 88 15 97.8 1 6 269 197 276 XP_004367841.1 domain found in dishevelled, egl10, and pleckstrin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 264 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;