RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1218818", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218818 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16910889 16910889 PRJNA1218818_P_NODE_24494_length_250_cov_0.870056_g24427_i0 PRJNA1218818 24494 250 0.870056 2.17514 Haliangium sp. 2663208 Bacteria Bacteria 97.1 2.07e-21   NR HWN71606.1 2663208 g24427 i0 54.2 0.996 83 38 99.6 0 250 2 228 310 HWN71606.1 Xaa-Pro peptidase family protein [Haliangium sp.] diamond 249 97.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium sp.
26629532 26629532 PRJNA1218818_P_NODE_25561_length_248_cov_0.880000_g25494_i0 PRJNA1218818 25561 248 0.88 2.1824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 72 1.9e-12   NR MBK8014032.1 2026735 g25494 i0 62.3 1.91129032258065 53 20 64.1 0 159 1 4 56 MBK8014032.1 30S ribosomal protein S1 [Deltaproteobacteria bacterium] diamond 474 72 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27515092 27515092 PRJNA1218818_P_NODE_25083_length_249_cov_0.875000_g25016_i0 PRJNA1218818 25083 249 0.875 2.17875 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 57 3.85e-7   NR MCC7536217.1 2026735 g25016 i0 38.6 1 83 50 100 1 1 249 50 131 MCC7536217.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 249 57 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;