RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218818", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218818 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13799681 13799681 PRJNA1218818_P_NODE_16691_length_305_cov_1.327586_g16624_i0 PRJNA1218818 16691 305 1.327586 4.0491373 root 1 Root_unresolved Root_unresolved 564 2.95e-156   NTclustered gi|314905776|gb|HM213230.1| 46086 g16624 i0 100 102 305 0 100 0 1 305 91 395 Elphidium aculeatum isolate A53.6 small subunit ribosomal RNA (SSU) gene, partial sequence; plastid blastn 31110 564 1 Eukaryota Sar   Foraminifera   Rotaliida Elphidiidae Elphidium Elphidium aculeatum
30041107 30041107 PRJNA1218818_P_NODE_27031_length_245_cov_0.895349_g26964_i0 PRJNA1218818 27031 245 0.895349 2.19360505 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 83.2 1.07e-16   NR ETO27253.1 46433 g26964 i0 51.2 1.00408163265306 82 34 96.7 3 243 7 196 274 ETO27253.1 hypothetical protein RFI_09882, partial [Reticulomyxa filosa] diamond 246 83.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;