RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1218818", tax_clade = "Opisthokonta" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1218818 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26838586 26838586 PRJNA1218818_P_NODE_27601_length_244_cov_0.877193_g27534_i0 PRJNA1218818 27601 244 0.877193 2.14035092 Opisthokonta 33154 Porifera other_Eukaryota 133 4.0999999999999995e-36   NR XP_064395651.1 6063 g27534 i0 82.3 24.2213114754098 79 14 97.1 0 239 3 1 79 XP_064395651.1 large ribosomal subunit protein uL18 [Halichondria panicea] diamond 5910 133 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea
28639145 28639145 PRJNA1218818_P_NODE_24687_length_250_cov_0.870056_g24620_i0 PRJNA1218818 24687 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 118 4.42e-29   NR XP_065195085.1 27933 g24620 i0 67.1 16.704 82 27 98.4 0 248 3 379 460 XP_065195085.1 methylmalonate-semialdehyde/malonate-semialdehyde dehydrogenase [acylating], mitochondrial-like [Sycon ciliatum] diamond 4176 118 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
29314821 29314821 PRJNA1218818_P_NODE_24129_length_251_cov_0.865169_g24062_i0 PRJNA1218818 24129 251 0.865169 2.17157419 Halichondria panicea 6063 Porifera other_Eukaryota 47 0.00132   NR XP_064391974.1 6063 g24062 i0 42.6 4.05179282868526 47 26 55 1 247 110 612 658 XP_064391974.1 NAD(+) hydrolase sarm1-like [Halichondria panicea] diamond 1017 47 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Suberitida Halichondriidae Halichondria Halichondria panicea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;