RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1218818", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1218818 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18185301 18185301 PRJNA1218818_P_NODE_22035_length_265_cov_1.052083_g21968_i0 PRJNA1218818 22035 265 1.052083 2.78801995 Opisthokonta 33154 Mollusca Mollusca 116 6.35e-31   NR XP_064602066.1 13599 g21968 i0 70.8 18.9283018867925 89 23 99.6 2 264 1 37 123 XP_064602066.1 large ribosomal subunit protein uL11-like [Liolophura japonica] diamond 5016 116 1 Eukaryota Opisthokonta Metazoa Mollusca Polyplacophora Chitonida Chitonidae Liolophura Liolophura japonica
29756712 29756712 PRJNA1218818_P_NODE_25211_length_249_cov_0.875000_g25144_i0 PRJNA1218818 25211 249 0.875 2.17875 Mercenaria mercenaria 6596 Mollusca Mollusca 69.7 1.25e-11   NR XP_053382951.1 6596 g25144 i0 44.3 1.56626506024096 79 40 95.2 1 248 12 535 609 XP_053382951.1 uncharacterized protein LOC123539907 [Mercenaria mercenaria] diamond 390 69.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
30755063 30755063 PRJNA1218818_P_NODE_26834_length_245_cov_0.895349_g26767_i0 PRJNA1218818 26834 245 0.895349 2.19360505 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 1.72e-36   NR CAG5129643.1 100452 g26767 i0 76.3 14.5591836734694 80 19 98 0 3 242 45 124 CAG5129643.1 unnamed protein product, partial [Candidula unifasciata] diamond 3567 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Geomitridae Candidula Candidula unifasciata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;