RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218816" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1218816 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19459581 19459581 PRJNA1218816_P_NODE_62596_length_241_cov_0.916667_g62163_i0 PRJNA1218816 62596 241 0.916667 2.20916747 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 291 4.22e-74   NTclustered gi|575456455|gb|CP007128.1| 861299 g62163 i0 88.382 48.0580912863071 241 28 100 0 1 241 1111206 1111446 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 11582 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
28083329 28083329 PRJNA1218816_P_NODE_55605_length_249_cov_0.875000_g55172_i0 PRJNA1218816 55605 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 87.4 5.75e-20   NR HEX4934845.1 2026741 g55172 i0 53.8 1.87951807228916 78 36 94 0 16 249 48 125 HEX4934845.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 468 87.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;