RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1218816" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1218816 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22010263 22010263 PRJNA1218816_P_NODE_59418_length_245_cov_0.895349_g58985_i0 PRJNA1218816 59418 245 0.895349 2.19360505 Candidatus Syngnamydia medusae 3141954 Bacteria Bacteria 387 5.34e-103   NTclustered gi|1127901232|emb|LT599033.1| 3141954 g58985 i0 95.102 311.473469387755 245 12 100 0 1 245 3048 3292 Uncultured Simkania sp. partial 23S rRNA gene, isolate M1 blastn 76311 387 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Syngnamydia Candidatus Syngnamydia medusae
23285747 23285747 PRJNA1218816_P_NODE_55539_length_249_cov_0.875000_g55106_i0 PRJNA1218816 55539 249 0.875 2.17875 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 350 7.14e-92   NTclustered gi|2738637493|gb|PP859054.1| 464461 g55106 i0 92.032 103.698795180723 251 16 100 4 1 249 285 37 Uncultured Parachlamydiaceae bacterium clone AS-Z4G7 16S ribosomal RNA gene, partial sequence blastn 25821 350 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
26946053 26946053 PRJNA1218816_P_NODE_52842_length_254_cov_1.276243_g52409_i0 PRJNA1218816 52842 254 1.276243 3.24165722 Simkania sp. 34094 Bacteria Bacteria 120 1.9499999999999999e-31   NR MCB1084310.1 34094 g52409 i0 65.5 0.992125984251969 84 29 99.2 0 2 253 93 176 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 252 120 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32190889 32190889 PRJNA1218816_P_NODE_36818_length_322_cov_1.224900_g36385_i0 PRJNA1218816 36818 322 1.2249 3.944178 Chlamydiales bacterium 2047757 Bacteria Bacteria 120 2.2299999999999998e-32   NR MCP5470420.1 2047757 g36385 i0 73.6 0.847826086956522 91 24 84.8 0 3 275 57 147 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 273 120 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;