RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218816", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11812172 11812172 PRJNA1218816_P_NODE_53570_length_251_cov_1.730337_g53137_i0 PRJNA1218816 53570 251 1.730337 4.34314587 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 156 9.68e-47   NR MCB0370127.1 2053517 g53137 i0 92.8 0.99203187250996006 83 6 99.2 0 251 3 54 136 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 249 156 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27515086 27515086 PRJNA1218816_P_NODE_11083_length_760_cov_1.366812_g10683_i0 PRJNA1218816 11083 760 1.366812 10.3877712 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 87 2.52e-18   NR MCB0370426.1 2053517 g10683 i0 75 0.252631578947368 64 16 25.3 0 155 346 1 64 MCB0370426.1 hypothetical protein [Bdellovibrionales bacterium] diamond 192 87 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;