RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1218816", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1608016 1608016 PRJNA1218816_P_NODE_30862_length_361_cov_1.524306_g30429_i0 PRJNA1218816 30862 361 1.524306 5.50274466 Fretibacterium fastidiosum 651822 Bacteria Bacteria 514 3.63e-141   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g30429 i0 92.308 307.950138504155 364 24 100 3 1 361 69234 68872 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 111170 514 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
5436675 5436675 PRJNA1218816_P_NODE_49365_length_266_cov_1.492228_g48932_i0 PRJNA1218816 49365 266 1.492228 3.96932648 Fretibacterium fastidiosum 651822 Bacteria Bacteria 370 5.91e-98   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g48932 i0 91.791 439.172932330827 268 18 100 2 1 266 67866 68131 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 116820 370 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;