RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218816", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28481101 28481101 PRJNA1218816_P_NODE_47026_length_275_cov_1.524752_g46593_i0 PRJNA1218816 47026 275 1.524752 4.193068 Opisthokonta 33154 Fungi Fungi 127 4.08e-35   NR KAI9216663.1 64508 g46593 i0 67.4 5.91272727272727 89 29 97.1 0 6 272 8 96 KAI9216663.1 ribosomal protein L24e-domain-containing protein [Blastocladiella britannica] diamond 1626 127 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica
29346469 29346469 PRJNA1218816_P_NODE_32169_length_351_cov_3.312950_g31736_i0 PRJNA1218816 32169 351 3.31295 11.6284545 Paraphysoderma sedebokerense 1500003 Fungi Fungi 175 1.8499999999999999e-54   NR KAI9142404.1 1500003 g31736 i0 78.3 1.81196581196581 106 23 90.6 0 319 2 1 106 KAI9142404.1 60s ribosomal protein l34-b, partial [Paraphysoderma sedebokerense] diamond 636 175 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;