RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA1218816", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 12 ✖

tax_kingdom 1

  • Bacillati · 12 ✖

bioproject 1

  • PRJNA1218816 · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6711270 6711270 PRJNA1218816_P_NODE_53046_length_253_cov_1.488889_g52613_i0 PRJNA1218816 53046 253 1.488889 3.76688917 uncultured Chloroflexota bacterium 166587 Bacteria Bacteria 429 9.079999999999999e-116   NTclustered gi|307112323|gb|HQ132380.1| 166587 g52613 i0 97.233 100.320158102767 253 7 100 0 1 253 303 51 Uncultured Chloroflexi bacterium clone X-49 16S ribosomal RNA gene, partial sequence blastn 25381 429 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexota bacterium
7987008 7987008 PRJNA1218816_P_NODE_9707_length_836_cov_1.813893_g9332_i0 PRJNA1218816 9707 836 1.813893 15.16414548 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 972 0   NTclustered gi|2874253704|emb|OY969431.1| 1672391 g9332 i0 87.886 286.058612440191 842 83 99 16 1 833 63879 64710 MAG: uncultured Chloroflexia bacterium isolate MFD02979.bin.c.2 genome assembly, chromosome: 1 blastn 239145 972 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
10537301 10537301 PRJNA1218816_P_NODE_49429_length_266_cov_1.196891_g48996_i0 PRJNA1218816 49429 266 1.196891 3.18373006 Tepidiforma bonchosmolovskayae 2601677 Bacteria Bacteria 219 2.27e-52   NTclustered gi|1756502384|gb|CP042829.1| 2601677 g48996 i0 82.937 196.289473684211 252 34 93 9 1 248 2202014 2202260 Tepidiforma bonchosmolovskayae strain 3753O chromosome, complete genome blastn 52213 219 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae Tepidiforma Tepidiforma bonchosmolovskayae
17623992 17623992 PRJNA1218816_P_NODE_30434_length_364_cov_2.635739_g30001_i0 PRJNA1218816 30434 364 2.635739 9.59408996 Bacillati 1783272 Bacteria Bacteria 340 6.579999999999999e-89   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g30001 i0 83.924 179.739010989011 367 47 99 10 2 364 2828217 2827859 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 65425 342 0.994152046783626 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
22009980 22009980 PRJNA1218816_P_NODE_25538_length_412_cov_2.587021_g25105_i0 PRJNA1218816 25538 412 2.587021 10.65852652 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 459 2.0000000000000003e-124   NTclustered gi|2874254062|emb|OY970386.1| 1672391 g25105 i0 86.842 109.711165048544 418 45 100 8 1 412 1889839 1889426 MAG: uncultured Chloroflexia bacterium isolate MFD03726.bin.c.14 genome assembly, chromosome: 1 blastn 45201 459 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
27122790 27122790 PRJNA1218816_P_NODE_54882_length_250_cov_0.870056_g54449_i0 PRJNA1218816 54882 250 0.870056 2.17514 Chloroflexota 200795 Bacteria Bacteria 145 1.72e-39   NR MCA9955183.1 2073117 g54449 i0 90.2 2.952 82 8 98.4 0 3 248 18 99 MCA9955183.1 hypothetical protein [Anaerolineales bacterium] diamond 738 145 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
27420608 27420608 PRJNA1218816_P_NODE_58523_length_246_cov_0.890173_g58090_i0 PRJNA1218816 58523 246 0.890173 2.18982558 Chloroflexota bacterium 2026724 Bacteria Bacteria 43.5 0.0202   NR HEY1295148.1 2026724 g58090 i0 40 0.609756097560976 50 28 58.5 1 9 152 433 482 HEY1295148.1 hypothetical protein [Chloroflexota bacterium] diamond 150 43.5 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27673117 27673117 PRJNA1218816_P_NODE_59404_length_245_cov_0.895349_g58971_i0 PRJNA1218816 59404 245 0.895349 2.19360505 Anaerolineales bacterium 2073117 Bacteria Bacteria 94.7 1.91e-20   NR MFN2195321.1 2073117 g58971 i0 52.5 0.979591836734694 80 38 98 0 240 1 457 536 MFN2195321.1 c-type cytochrome [Anaerolineales bacterium] diamond 240 94.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
27767903 27767903 PRJNA1218816_P_NODE_62424_length_241_cov_1.488095_g61991_i0 PRJNA1218816 62424 241 1.488095 3.58630895 Chloroflexota bacterium 2026724 Bacteria Bacteria 60.1 2.3e-9   NR MDQ3657683.1 2026724 g61991 i0 58.3 0.597510373443983 48 18 59.8 1 231 88 69 114 MDQ3657683.1 hypothetical protein [Chloroflexota bacterium] diamond 144 60.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27925560 27925560 PRJNA1218816_P_NODE_55785_length_249_cov_0.875000_g55352_i0 PRJNA1218816 55785 249 0.875 2.17875 Chloroflexi bacterium OLB15 1617416 Bacteria Bacteria 55.1 1.75e-6   NR KXK24431.1 1617416 g55352 i0 90.3 0.373493975903614 31 3 37.3 0 156 248 1 31 KXK24431.1 MAG: hypothetical protein UZ15_CFX003000251 [Chloroflexi bacterium OLB15] diamond 93 55.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium OLB15
28809290 28809290 PRJNA1218816_P_NODE_61128_length_243_cov_0.905882_g60695_i0 PRJNA1218816 61128 243 0.905882 2.20129326 Caldilinea sp. 2293560 Bacteria Bacteria 120 1.31e-33   NR MFN3980534.1 2293560 g60695 i0 91.4 1.72839506172839 70 6 86.4 0 32 241 1 70 MFN3980534.1 addiction module antidote protein [Caldilinea sp.] diamond 420 120 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea sp.
31716216 31716216 PRJNA1218816_P_NODE_48697_length_268_cov_2.410256_g48264_i0 PRJNA1218816 48697 268 2.410256 6.45948608 Promineifilum sp. 2664178 Bacteria Bacteria 129 1.4299999999999996e-34   NR HRN68583.1 2664178 g48264 i0 81.3 1.7910447761194 80 15 89.6 0 1 240 176 255 HRN68583.1 alpha/beta hydrolase [Promineifilum sp.] diamond 480 129 1 Bacteria   Bacillati Chloroflexota Ardenticatenia Candidatus Promineifilales Candidatus Promineifilaceae Candidatus Promineifilum Promineifilum sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;