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contig_metadata

17 rows where bioproject = "PRJNA1218816", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 17 ✖

tax_clade 1

  • Sar · 17 ✖

bioproject 1

  • PRJNA1218816 · 17 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
333219 333219 PRJNA1218816_P_NODE_28681_length_380_cov_1.368078_g28248_i0 PRJNA1218816 28681 380 1.368078 5.1986964 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 403 8.68e-108   NTclustered gi|166047767|emb|CU362882.1| 100861 g28248 i0 86.133 97.8473684210526 375 50 98 2 1 374 471 98 Aphanomyces euteiches cDNA blastn 37182 403 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
333449 333449 PRJNA1218816_P_NODE_54101_length_251_cov_0.865169_g53668_i0 PRJNA1218816 54101 251 0.865169 2.17157419 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 167 7.789999999999999e-37   NTclustered gi|673017857|ref|XM_008864668.1| 157072 g53668 i0 79.487 3.92430278884462 234 48 93 0 8 241 229 462 Aphanomyces invadans 60S ribosomal protein mRNA blastn 985 167 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1607958 1607958 PRJNA1218816_P_NODE_23402_length_439_cov_2.043716_g22969_i0 PRJNA1218816 23402 439 2.043716 8.97191324 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 4.97e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g22969 i0 80.533 76.9635535307517 375 65 84 4 3 370 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33787 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16910364 16910364 PRJNA1218816_P_NODE_21934_length_460_cov_3.180879_g21501_i0 PRJNA1218816 21934 460 3.180879 14.6320434 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 186 4.609999999999999e-55   NR KAG9404282.1 112091 g21501 i0 76.9 6.11739130434783 117 27 76.3 0 459 109 207 323 KAG9404282.1 Guanine nucleotide-binding protein subunit beta-2-like 1 [Aphanomyces cochlioides] diamond 2814 186 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
25272438 25272438 PRJNA1218816_P_NODE_37460_length_318_cov_1.885714_g37027_i0 PRJNA1218816 37460 318 1.885714 5.99657052 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 241 5.930000000000001e-59   NTclustered gi|59894163|gb|AY729864.1| 74557 g37027 i0 81.882 100.672955974843 287 50 90 2 3 288 941 1226 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 32014 241 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
27249543 27249543 PRJNA1218816_P_NODE_24443_length_425_cov_3.917614_g24010_i0 PRJNA1218816 24443 425 3.917614 16.6498595 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 161 2.6799999999999993e-43   NR XP_024573476.1 4781 g24010 i0 64.7 9.64941176470588 116 41 81.9 0 414 67 533 648 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 4101 162 0.993827160493827 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
27420609 27420609 PRJNA1218816_P_NODE_61183_length_243_cov_0.905882_g60750_i0 PRJNA1218816 61183 243 0.905882 2.20129326 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 67.4 7.87e-11   NR KAF0697097.1 120398 g60750 i0 42.1 3.93827160493827 76 38 86.4 1 210 1 49 124 KAF0697097.1 hypothetical protein As57867_012159 [Aphanomyces stellatus] diamond 957 67.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27830777 27830777 PRJNA1218816_P_NODE_56364_length_248_cov_0.880000_g55931_i0 PRJNA1218816 56364 248 0.88 2.1824 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 157 9.429999999999997e-43   NR KAG4058653.1 29920 g55931 i0 87.8 9.91935483870968 82 10 99.2 0 247 2 221 302 KAG4058653.1 Alanine--tRNA ligase, partial [Phytophthora cactorum] diamond 2460 157 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
28228245 28228245 PRJNA1218816_P_NODE_54826_length_250_cov_0.870056_g54393_i0 PRJNA1218816 54826 250 0.870056 2.17514 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 70.9 4.9e-12   NR POM76828.1 4796 g54393 i0 60.9 6.42 69 22 76.8 1 197 6 566 634 POM76828.1 Histone deacetylase [Phytophthora palmivora] diamond 1605 71.6 0.990223463687151 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
28575745 28575745 PRJNA1218816_P_NODE_31067_length_360_cov_1.073171_g30634_i0 PRJNA1218816 31067 360 1.073171 3.8634156 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 108 7.080000000000001e-27   NR DBA01302.1 4803 g30634 i0 54.2 1.80833333333333 118 52 97.5 2 359 9 54 170 DBA01302.1 TPA: hypothetical protein N0F65_001807 [Lagenidium giganteum] diamond 651 108 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
28670651 28670651 PRJNA1218816_P_NODE_62847_length_241_cov_0.916667_g62414_i0 PRJNA1218816 62847 241 0.916667 2.20916747 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.21e-6   NR XP_024573036.1 4781 g62414 i0 59.5 2.78838174273859 42 17 52.3 0 13 138 281 322 XP_024573036.1 camk protein kinase [Plasmopara halstedii] diamond 672 55.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
28809289 28809289 PRJNA1218816_P_NODE_52428_length_255_cov_1.692308_g51995_i0 PRJNA1218816 52428 255 1.692308 4.3153854 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 59.3 5.92e-8   NR KAH9104585.1 100861 g51995 i0 42.2 2.92941176470588 83 40 88.2 3 11 235 192 274 KAH9104585.1 hypothetical protein AeMF1_019369 [Aphanomyces euteiches] diamond 747 59.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28986517 28986517 PRJNA1218816_P_NODE_49648_length_265_cov_1.416667_g49215_i0 PRJNA1218816 49648 265 1.416667 3.75416755 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 107 8.2e-28   NR XP_067789141.1 4785 g49215 i0 55.2 7.85660377358491 87 39 98.5 0 3 263 5 91 XP_067789141.1 40S ribosomal protein S10 [Phytophthora cinnamomi] diamond 2082 107 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29270234 29270234 PRJNA1218816_P_NODE_45889_length_280_cov_1.115942_g45456_i0 PRJNA1218816 45889 280 1.115942 3.1246376 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 152 3.46e-44   NR POM73368.1 4796 g45456 i0 82.6 12.8142857142857 92 16 98.6 0 3 278 78 169 POM73368.1 Pyridoxal biosynthesis lyase pdxS [Phytophthora palmivora] diamond 3588 152 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
30533771 30533771 PRJNA1218816_P_NODE_44613_length_285_cov_1.415094_g44180_i0 PRJNA1218816 44613 285 1.415094 4.0330179 root 1 Root_unresolved Root_unresolved 121 1.59e-29   NR RLN60055.1 325452 g44180 i0 65.9 7.53684210526316 88 30 92.6 0 17 280 822 909 RLN60055.1 hypothetical protein BBP00_00006218 [Phytophthora kernoviae] diamond 2148 122 0.991803278688525 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
31115104 31115104 PRJNA1218816_P_NODE_50495_length_262_cov_1.301587_g50062_i0 PRJNA1218816 50495 262 1.301587 3.41015794 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 81.6 9.82e-16   NR KAI9909779.1 230839 g50062 i0 50 2.48473282442748 72 36 82.4 0 10 225 753 824 KAI9909779.1 hypothetical protein PsorP6_011182 [Peronosclerospora sorghi] diamond 651 81.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
31811136 31811136 PRJNA1218816_P_NODE_48337_length_270_cov_1.172589_g47904_i0 PRJNA1218816 48337 270 1.172589 3.1659903 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0175   NR TMW65280.1 41045 g47904 i0 42.9 1.83333333333333 42 23 45.6 1 2 124 124 165 TMW65280.1 hypothetical protein Poli38472_007922 [Pythium oligandrum] diamond 495 43.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;