RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218816", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6711308 6711308 PRJNA1218816_P_NODE_57246_length_247_cov_0.885057_g56813_i0 PRJNA1218816 57246 247 0.885057 2.18609079 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 191 4.53e-44   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g56813 i0 81.673 17.7773279352227 251 26 100 11 1 247 3746 3980 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 4391 191 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
10537371 10537371 PRJNA1218816_P_NODE_55389_length_249_cov_1.312500_g54956_i0 PRJNA1218816 55389 249 1.3125 3.268125 Cercomonadida sp. C15_1A03 595691 SAR_Eukaryotes SAR_Eukaryotes 427 3.2e-115   NTclustered gi|223047882|gb|FJ032646.1| 595691 g54956 i0 97.59 99.9236947791165 249 6 100 0 1 249 1684 1932 Cercomonadida sp. C15_1A03 28S ribosomal RNA gene, partial sequence blastn 24881 427 1 Eukaryota Sar   Cercozoa   Cercomonadida     Cercomonadida sp. C15_1A03

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;