RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218816", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1608037 1608037 PRJNA1218816_P_NODE_34062_length_338_cov_2.305660_g33629_i0 PRJNA1218816 34062 338 2.30566 7.7931308 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 625 1.4999999999999999e-174   NTclustered gi|665764067|pdb|1VX6|A 36329 g33629 i0 100 52.6745562130178 338 0 100 0 1 338 3730 3393 Chain A, 28S ribosomal RNA blastn 17804 625 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
12524946 12524946 PRJNA1218816_P_NODE_52450_length_255_cov_1.648352_g52017_i0 PRJNA1218816 52450 255 1.648352 4.2032976 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 472 1.5e-128   NTclustered gi|160642|gb|M19172.1|PFARGEA 5833 g52017 i0 100 101.227450980392 255 0 100 0 1 255 1931 1677 P.falciparum 18S ribosomal RNA in asexual parasites blastn 25813 472 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;