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contig_metadata

24 rows where bioproject = "PRJNA1218816" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 24 ✖

bioproject 1

  • PRJNA1218816 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
333186 333186 PRJNA1218816_P_NODE_24701_length_422_cov_1.684814_g24268_i0 PRJNA1218816 24701 422 1.684814 7.10991508 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 754 0   NTclustered gi|861553739|gb|KP719185.1| 1678066 g24268 i0 98.815 84.6184834123223 422 5 100 0 1 422 1402 1823 Korotnevella jeppesenii strain A1JEPDK small subunit ribosomal RNA gene, partial sequence blastn 35709 754 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
333263 333263 PRJNA1218816_P_NODE_35021_length_332_cov_1.837838_g34588_i0 PRJNA1218816 35021 332 1.837838 6.10162216 Ripella tribonemae 2047823 Discosea other_Eukaryota 497 3.34e-136   NTclustered gi|1269228454|gb|MF683579.1| 2047823 g34588 i0 93.769 100.560240963855 337 11 100 7 1 332 1308 1639 Ripella tribonemae clone 70.1.14 18S ribosomal RNA gene, partial sequence blastn 33386 497 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
1608237 1608237 PRJNA1218816_P_NODE_58002_length_246_cov_1.520231_g57569_i0 PRJNA1218816 58002 246 1.520231 3.73976826 Dermamoebida sp. 2959661 Discosea other_Eukaryota 211 3.46e-50   NTclustered gi|2270840643|gb|ON979785.1| 2959661 g57569 i0 89.08 43.5934959349593 174 13 69 6 77 246 427 598 Dermamoebida sp. strain 1 small subunit ribosomal RNA gene, partial sequence blastn 10724 211 1 Eukaryota Amoebozoa   Discosea   Longamoebia     Dermamoebida sp.
4160315 4160315 PRJNA1218816_P_NODE_33064_length_345_cov_1.705882_g32631_i0 PRJNA1218816 33064 345 1.705882 5.8852929 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 595 1.1999999999999999e-165   NTclustered gi|300078498|gb|GU001160.1| 5755 g32631 i0 97.971 18.231884057971 345 3 100 3 1 345 5401 5741 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6290 595 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5436450 5436450 PRJNA1218816_P_NODE_16745_length_559_cov_3.773663_g16318_i0 PRJNA1218816 16745 559 3.773663 21.09477617 Ripella sp. 805 1217113 Discosea other_Eukaryota 848 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g16318 i0 94.434 99.5348837209302 557 21 99 7 1 554 550 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55640 848 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
5436493 5436493 PRJNA1218816_P_NODE_25105_length_417_cov_1.851744_g24672_i0 PRJNA1218816 25105 417 1.851744 7.72177248 Paramoeba branchiphila 308475 Discosea other_Eukaryota 492 1.9899999999999998e-134   NTclustered gi|226347442|gb|FJ807261.1| 308475 g24672 i0 88.01 95.8968824940048 417 49 100 1 1 417 1134 719 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 39989 492 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
10537164 10537164 PRJNA1218816_P_NODE_33329_length_343_cov_2.018519_g32896_i0 PRJNA1218816 33329 343 2.018519 6.92352017 Entamoeba dispar 46681 Evosea other_Eukaryota 254 8.28e-63   NTclustered gi|167388768|ref|XM_001738637.1| 370354 g32896 i0 80.46 34.8046647230321 348 55 99 12 2 343 602 942 Entamoeba dispar SAW760 26S protease regulatory subunit 6A, putative (EDI_316920), partial mRNA blastn 11938 254 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
12524934 12524934 PRJNA1218816_P_NODE_44730_length_284_cov_2.213270_g44297_i0 PRJNA1218816 44730 284 2.21327 6.2856868 Ripella 1217112 Discosea other_Eukaryota 185 2.4799999999999993e-42   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g44297 i0 84.343 69.1549295774648 198 21 68 8 93 284 1353 1160 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 19640 185 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
13087320 13087320 PRJNA1218816_P_NODE_64251_length_221_cov_4.229730_g63818_i0 PRJNA1218816 64251 221 4.22973 9.3477033 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 154 5.22e-33   NTclustered gi|221185864|gb|FJ577811.1| 590481 g63818 i0 88.06 41.6018099547511 134 10 60 5 1 132 1227 1098 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 9194 154 1 Eukaryota Amoebozoa             uncultured Amoebozoa
15636195 15636195 PRJNA1218816_P_NODE_25613_length_411_cov_2.813609_g25180_i0 PRJNA1218816 25613 411 2.813609 11.56393299 Ripella decalvata 2047822 Discosea other_Eukaryota 617 3.0999999999999997e-172   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g25180 i0 93.961 100.885644768856 414 15 100 6 1 411 971 565 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 41464 617 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
15636267 15636267 PRJNA1218816_P_NODE_36493_length_324_cov_1.115538_g36060_i0 PRJNA1218816 36493 324 1.115538 3.61434312 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 84.7 2.01e-18   NR KAH3763125.1 1580589 g36060 i0 63.9 3.32407407407407 61 22 56.5 0 320 138 12 72 KAH3763125.1 60S acidic ribosomal protein P1 [Pelomyxa schiedti] diamond 1077 84.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
20735033 20735033 PRJNA1218816_P_NODE_62897_length_241_cov_0.916667_g62464_i0 PRJNA1218816 62897 241 0.916667 2.20916747 Vannella septentrionalis 197531 Discosea other_Eukaryota 396 8.7e-106   NTclustered gi|300078499|gb|GU001161.1| 197531 g62464 i0 96.266 32.5726141078838 241 9 100 0 1 241 1134 894 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7850 396 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
24559590 24559590 PRJNA1218816_P_NODE_46500_length_277_cov_1.671569_g46067_i0 PRJNA1218816 46500 277 1.671569 4.63024613 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 512 9.73e-141   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g46067 i0 100 56.6714801444043 277 0 100 0 1 277 584 860 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 15698 512 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
26914451 26914451 PRJNA1218816_P_NODE_59942_length_244_cov_0.900585_g59509_i0 PRJNA1218816 59942 244 0.900585 2.1974274 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 57.8 7.05e-8   NR KAH3762566.1 1580589 g59509 i0 59.6 1.27868852459016 52 16 63.9 2 4 159 147 193 KAH3762566.1 Rac1A protein [Pelomyxa schiedti] diamond 312 57.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27388964 27388964 PRJNA1218816_P_NODE_51843_length_257_cov_1.673913_g51410_i0 PRJNA1218816 51843 257 1.673913 4.30195641 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 51.2 2.14e-5   NR XP_647082.1 352472 g51410 i0 65.8 0.443579766536965 38 13 44.4 0 252 139 1 38 XP_647082.1 hypothetical protein DDB_G0268264 [Dictyostelium discoideum AX4] diamond 114 51.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29125647 29125647 PRJNA1218816_P_NODE_54749_length_250_cov_0.870056_g54316_i0 PRJNA1218816 54749 250 0.870056 2.17514 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 100 1.75e-22   NR KYR01862.1 361077 g54316 i0 67.2 0.732 61 20 73.2 0 249 67 392 452 KYR01862.1 aldehyde dehydrogenase [Tieghemostelium lacteum] diamond 183 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29788247 29788247 PRJNA1218816_P_NODE_59431_length_245_cov_0.895349_g58998_i0 PRJNA1218816 59431 245 0.895349 2.19360505 Cavenderia fasciculata 261658 Evosea other_Eukaryota 115 1.12e-27   NR XP_004355233.1 261658 g58998 i0 63.8 3.91836734693878 80 29 98 0 245 6 220 299 XP_004355233.1 NADP-dependent malate dehydrogenase [Cavenderia fasciculata] diamond 960 115 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
30294270 30294270 PRJNA1218816_P_NODE_43012_length_291_cov_3.009174_g42579_i0 PRJNA1218816 43012 291 3.009174 8.75669634 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 102 2.39e-23   NR KYQ91790.1 361077 g42579 i0 55.1 1.01030927835052 98 41 99 2 289 2 223 319 KYQ91790.1 severin [Tieghemostelium lacteum] diamond 294 102 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
30344828 30344828 PRJNA1218816_P_NODE_54732_length_250_cov_0.870056_g54299_i0 PRJNA1218816 54732 250 0.870056 2.17514 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 6.419999999999999e-24   NR XP_004333651.1 1257118 g54299 i0 55.4 1.992 83 37 99.6 0 2 250 189 271 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 498 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31558302 31558302 PRJNA1218816_P_NODE_60256_length_244_cov_0.900585_g59823_i0 PRJNA1218816 60256 244 0.900585 2.1974274 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 90.9 4.03e-19   NR PRP89797.1 1890364 g59823 i0 57.3 3.75 75 32 92.2 0 225 1 218 292 PRP89797.1 hypothetical protein PROFUN_00139 [Planoprotostelium fungivorum] diamond 915 90.9 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31779332 31779332 PRJNA1218816_P_NODE_35597_length_329_cov_1.453125_g35164_i0 PRJNA1218816 35597 329 1.453125 4.78078125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.3 7.23e-21   NR XP_004333787.1 1257118 g35164 i0 46.8 0.857142857142857 94 49 84.8 1 282 4 3 96 XP_004333787.1 Cofilin/tropomyosin-type actin-binding protein [Acanthamoeba castellanii str. Neff] diamond 282 91.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31842573 31842573 PRJNA1218816_P_NODE_60457_length_244_cov_0.900585_g60024_i0 PRJNA1218816 60457 244 0.900585 2.1974274 Physarum polycephalum 5791 Evosea other_Eukaryota 64.7 6.69e-10   NR P80197.2 5791 g60024 i0 38.4 0.897540983606557 73 43 87.3 1 15 227 492 564 P80197.2 RecName: Full=Actin-fragmin kinase; Short=AFK [Physarum polycephalum] diamond 219 64.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
32159309 32159309 PRJNA1218816_P_NODE_54738_length_250_cov_0.870056_g54305_i0 PRJNA1218816 54738 250 0.870056 2.17514 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 124 7.21e-33   NR KAH3744218.1 1580589 g54305 i0 75.3 7.248 77 19 92.4 0 231 1 1 77 KAH3744218.1 subunit of heterodimeric actin capping protein cap32/34 [Pelomyxa schiedti] diamond 1812 124 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32601964 32601964 PRJNA1218816_P_NODE_40280_length_304_cov_1.333333_g39847_i0 PRJNA1218816 40280 304 1.333333 4.05333232 Polysphondylium violaceum 133409 Evosea other_Eukaryota 97.1 2.1500000000000003e-21   NR KAF2076051.1 133409 g39847 i0 53.1 0.947368421052632 96 42 91.8 2 16 294 247 342 KAF2076051.1 hypothetical protein CYY_002665 [Polysphondylium violaceum] diamond 288 97.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;