RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1215813" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1215813 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31589863 31589863 PRJNA1215813_P_NODE_6696_length_303_cov_1.017391_g6616_i0 PRJNA1215813 6696 303 1.017391 3.08269473 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 68.2 5.18e-11   NR MFP4303141.1 1898206 g6616 i0 40.5 0.831683168316832 84 47 80.2 1 3 245 115 198 MFP4303141.1 aspartoacylase [Spirochaetaceae bacterium] diamond 252 68.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
31842559 31842559 PRJNA1215813_P_NODE_3117_length_429_cov_1.095506_g3037_i0 PRJNA1215813 3117 429 1.095506 4.69972074 Spirochaetales bacterium 2026792 Bacteria Bacteria 58.5 7.36e-7   NR HPG85241.1 2026792 g3037 i0 38.3 1.63636363636364 120 55 79 6 8 346 267 374 HPG85241.1 CAP domain-containing protein [Spirochaetales bacterium] diamond 702 58.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
31874294 31874294 PRJNA1215813_P_NODE_7317_length_290_cov_1.023041_g7237_i0 PRJNA1215813 7317 290 1.023041 2.9668189 Parasphaerochaeta coccoides 273376 Bacteria Bacteria 64.7 1.24e-9   NR WP_013739987.1 273376 g7237 i0 37.3 3.68275862068965 83 50 85.9 1 251 3 611 691 WP_013739987.1 fimbrillin family protein [Parasphaerochaeta coccoides] diamond 1068 64.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Parasphaerochaeta Parasphaerochaeta coccoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;