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contig_metadata

22 rows where bioproject = "PRJNA1215813", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 22 ✖

tax_kingdom 1

  • Metazoa · 22 ✖

tax_clade 1

bioproject 1

  • PRJNA1215813 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
331593 331593 PRJNA1215813_P_NODE_11161_length_247_cov_0.896552_g11081_i0 PRJNA1215813 11161 247 0.896552 2.21448344 Caenorhabditis elegans 6239 Nematoda Nematoda 274 4.38e-69   NTclustered gi|687865697|emb|LK927572.1| 6239 g11081 i0 86.64 163.291497975708 247 33 100 0 1 247 120553 120799 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000039 blastn 40333 274 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2882668 2882668 PRJNA1215813_P_NODE_1903_length_539_cov_1.637339_g1823_i0 PRJNA1215813 1903 539 1.637339 8.82525721 Strongyloides ratti 34506 Nematoda Nematoda 289 3.71e-73   NTclustered gi|1376135693|ref|XM_024647883.1| 34506 g1823 i0 79.369 60.7736549165121 412 83 76 2 28 438 1 411 Strongyloides ratti Histone H3 (SRAE_1000098500), partial mRNA blastn 32757 289 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19457798 19457798 PRJNA1215813_P_NODE_3576_length_402_cov_1.392097_g3496_i0 PRJNA1215813 3576 402 1.392097 5.59622994 Caenorhabditis elegans 6239 Nematoda Nematoda 167 1.32e-36   NTclustered gi|1972267160|ref|NM_069458.7| 6239 g3496 i0 82.292 2.4228855721393 192 34 48 0 211 402 256 447 Caenorhabditis elegans Small ribosomal subunit protein RACK1 (rack-1), mRNA blastn 974 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19457806 19457806 PRJNA1215813_P_NODE_4136_length_375_cov_5.231788_g4056_i0 PRJNA1215813 4136 375 5.231788 19.619205 Caenorhabditis briggsae 6238 Nematoda Nematoda 294 5.37e-75   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g4056 i0 83.819 78.552 309 50 82 0 67 375 55 363 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 29457 294 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
19457813 19457813 PRJNA1215813_P_NODE_4796_length_350_cov_2.909747_g4716_i0 PRJNA1215813 4796 350 2.909747 10.1841145 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 183 1.12e-41   NTclustered gi|150982147|gb|EF634662.1| 452809 g4716 i0 87.821 46.2885714285714 156 19 45 0 149 304 165 10 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 27a (rpl-27a) mRNA, partial cds blastn 16201 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
19457819 19457819 PRJNA1215813_P_NODE_5136_length_340_cov_1.471910_g5056_i0 PRJNA1215813 5136 340 1.47191 5.004494 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 183 1.0899999999999998e-41   NTclustered gi|150984457|gb|EF634871.1| 452809 g5056 i0 77.492 28.0941176470588 311 66 91 3 1 309 324 16 Pristionchus sp. 15 RS5229 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 9552 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
23283925 23283925 PRJNA1215813_P_NODE_2599_length_467_cov_1.449239_g2519_i0 PRJNA1215813 2599 467 1.449239 6.76794613 Pristionchus pauli 376545 Nematoda Nematoda 292 2.4599999999999993e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g2519 i0 81.492 8.70663811563169 362 61 77 6 43 401 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 4066 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
26742949 26742949 PRJNA1215813_P_NODE_6021_length_318_cov_0.955102_g5941_i0 PRJNA1215813 6021 318 0.955102 3.03722436 Opisthokonta 33154 Nematoda Nematoda 131 1.35e-36   NR TMS35535.1 34508 g5941 i0 63.9 9.91509433962264 97 35 91.5 0 9 299 53 149 TMS35535.1 hypothetical protein L596_002918 [Steinernema carpocapsae] diamond 3153 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
27009301 27009301 PRJNA1215813_P_NODE_9662_length_252_cov_0.871508_g9582_i0 PRJNA1215813 9662 252 0.871508 2.19620016 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 60.1 3.23e-8   NR KAI6175940.1 293665 g9582 i0 44.4 1.71428571428571 72 40 85.7 0 222 7 1 72 KAI6175940.1 Seryl-tRNA synthetase [Aphelenchoides bicaudatus] diamond 432 60.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
27957145 27957145 PRJNA1215813_P_NODE_9425_length_253_cov_0.866667_g9345_i0 PRJNA1215813 9425 253 0.866667 2.19266751 Caenorhabditis sp. 36 PRJEB53466 2970133 Nematoda Nematoda 49.3 1.95e-4   NR CAI2346016.1 2970133 g9345 i0 56.8 3.03557312252964 37 16 43.9 0 111 221 11 47 CAI2346016.1 unnamed protein product [Caenorhabditis sp. 36 PRJEB53466] diamond 768 49.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis sp. 36 PRJEB53466
28259869 28259869 PRJNA1215813_P_NODE_10026_length_251_cov_0.876404_g9946_i0 PRJNA1215813 10026 251 0.876404 2.19977404 Rhabditida 6236 Nematoda Nematoda 50.8 1.29e-5   NR VDM69699.1 40348 g9946 i0 35.9 6.54980079681275 78 40 93.2 2 245 12 39 106 VDM69699.1 unnamed protein product [Strongylus vulgaris] diamond 1644 51.2 0.9921875 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Strongylus Strongylus vulgaris
28588774 28588774 PRJNA1215813_P_NODE_9267_length_253_cov_1.300000_g9187_i0 PRJNA1215813 9267 253 1.3 3.289 Onchocerca ochengi 42157 Nematoda Nematoda 68.6 3.29e-11   NR VDK81781.1 42157 g9187 i0 47.4 5.64426877470356 78 38 88.9 2 233 9 349 426 VDK81781.1 unnamed protein product, partial [Onchocerca ochengi] diamond 1428 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca ochengi
28651724 28651724 PRJNA1215813_P_NODE_847_length_765_cov_3.445087_g780_i0 PRJNA1215813 847 765 3.445087 26.35491555 Mesorhabditis spiculigera 96644 Nematoda Nematoda 52.4 0.00101   NR CAJ0581790.1 96644 g780 i0 50 1.29411764705882 78 31 29 4 522 743 173 246 CAJ0581790.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 990 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
29630148 29630148 PRJNA1215813_P_NODE_7170_length_292_cov_1.068493_g7090_i0 PRJNA1215813 7170 292 1.068493 3.11999956 Strongyloides ratti 34506 Nematoda Nematoda 131 2.07e-35   NR XP_024500476.1 34506 g7090 i0 73.3 5.26027397260274 86 23 88.4 0 6 263 171 256 XP_024500476.1 40S ribosomal protein S4 [Strongyloides ratti] diamond 1536 131 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30326008 30326008 PRJNA1215813_P_NODE_4792_length_350_cov_4.122744_g4712_i0 PRJNA1215813 4792 350 4.122744 14.429604 Ancylostoma caninum 29170 Nematoda Nematoda 46.6 0.0016   NR RCN41815.1 29170 g4712 i0 44 0.857142857142857 100 53 85.7 1 51 350 20 116 RCN41815.1 hypothetical protein ANCCAN_12244 [Ancylostoma caninum] diamond 300 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
30704531 30704531 PRJNA1215813_P_NODE_6034_length_317_cov_1.918033_g5954_i0 PRJNA1215813 6034 317 1.918033 6.08016461 Heterodera trifolii 157864 Nematoda Nematoda 58.9 7.48e-8   NR KAL3114088.1 157864 g5954 i0 55.8 1.98738170347003 52 19 47.3 2 165 16 6 55 KAL3114088.1 hypothetical protein niasHT_010902 [Heterodera trifolii] diamond 630 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
30755057 30755057 PRJNA1215813_P_NODE_9354_length_253_cov_0.866667_g9274_i0 PRJNA1215813 9354 253 0.866667 2.19266751 Metazoa 33208 Nematoda Nematoda 78.6 7.46e-17   NR KHN75539.1 6265 g9274 i0 80.4 91.7786561264822 46 9 54.5 0 1 138 46 91 KHN75539.1 60S ribosomal protein L39 [Toxocara canis] diamond 23220 78.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
31368516 31368516 PRJNA1215813_P_NODE_12056_length_243_cov_1.823529_g11976_i0 PRJNA1215813 12056 243 1.823529 4.43117547 Aphelenchoides avenae 70226 Nematoda Nematoda 64.3 2.06e-11   NR KAH7730545.1 70226 g11976 i0 45.8 10.1604938271605 72 37 86.4 1 223 14 10 81 KAH7730545.1 hypothetical protein AAVH_01593 [Aphelenchoides avenae] diamond 2469 64.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
31861372 31861372 PRJNA1215813_P_NODE_9437_length_253_cov_0.866667_g9357_i0 PRJNA1215813 9437 253 0.866667 2.19266751 Pristionchus 54125 Nematoda Nematoda 99.8 3.84e-22   NR KAF8362053.1 54126 g9357 i0 56 3.98418972332016 84 32 99.6 1 2 253 563 641 KAF8362053.1 hypothetical protein PRIPAC_88976 [Pristionchus pacificus] diamond 1008 99.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
32178114 32178114 PRJNA1215813_P_NODE_8298_length_272_cov_1.065327_g8218_i0 PRJNA1215813 8298 272 1.065327 2.89768944 Rhabditida 6236 Nematoda Nematoda 54.7 3.24e-6   NR VDD88345.1 51028 g8218 i0 36.5 2.44852941176471 74 44 79.4 2 6 221 298 370 VDD88345.1 unnamed protein product [Enterobius vermicularis] diamond 666 55.1 0.992740471869329 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
32601954 32601954 PRJNA1215813_P_NODE_6680_length_303_cov_1.356522_g6600_i0 PRJNA1215813 6680 303 1.356522 4.11026166 Meloidogyne enterolobii 390850 Nematoda Nematoda 44.3 0.0219   NR CAK5074489.1 390850 g6600 i0 30.1 1.7029702970297 93 48 75.2 2 1 228 508 600 CAK5074489.1 unnamed protein product [Meloidogyne enterolobii] diamond 516 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
32715101 32715101 PRJNA1215813_P_NODE_7800_length_281_cov_1.500000_g7720_i0 PRJNA1215813 7800 281 1.5 4.215 Opisthokonta 33154 Nematoda Nematoda 99 5.409999999999999e-23   NR XP_064059350.1 51031 g7720 i0 48.4 6.95017793594306 93 46 99.3 1 279 1 142 232 XP_064059350.1 hypothetical protein RB195_013581 [Necator americanus] diamond 1953 100 0.99 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;