RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1215813", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1215813 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14360774 14360774 PRJNA1215813_P_NODE_5092_length_342_cov_0.869888_g5012_i0 PRJNA1215813 5092 342 0.869888 2.97501696 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 171 7.159999999999999e-47   NR CEO97381.1 37360 g5012 i0 68.1 0.991228070175439 113 36 99.1 0 341 3 494 606 CEO97381.1 hypothetical protein PBRA_000726 [Plasmodiophora brassicae] diamond 339 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27628800 27628800 PRJNA1215813_P_NODE_6744_length_302_cov_1.017467_g6664_i0 PRJNA1215813 6744 302 1.017467 3.07275034 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 82 1.17e-15   NR SPQ96449.1 37360 g6664 i0 50 9.1887417218543 92 43 91.4 2 26 301 91 179 SPQ96449.1 unnamed protein product [Plasmodiophora brassicae] diamond 2775 82 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28083309 28083309 PRJNA1215813_P_NODE_7725_length_282_cov_8.760766_g7645_i0 PRJNA1215813 7725 282 8.760766 24.70536012 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 57.4 4.14e-7   NR CEO98658.1 37360 g7645 i0 65.3 0.521276595744681 49 13 48.9 2 9 146 642 689 CEO98658.1 hypothetical protein PBRA_006772 [Plasmodiophora brassicae] diamond 147 57.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29314807 29314807 PRJNA1215813_P_NODE_7609_length_285_cov_1.103774_g7529_i0 PRJNA1215813 7609 285 1.103774 3.1457559 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 122 3.12e-32   NR SPQ95645.1 37360 g7529 i0 51.6 0.978947368421053 93 44 96.8 1 7 282 85 177 SPQ95645.1 unnamed protein product [Plasmodiophora brassicae] diamond 279 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30515022 30515022 PRJNA1215813_P_NODE_3233_length_422_cov_1.787966_g3153_i0 PRJNA1215813 3233 422 1.787966 7.54521652 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 162 3.66e-43   NR CEO97381.1 37360 g3153 i0 61.4 0.995260663507109 140 52 99.5 1 421 2 849 986 CEO97381.1 hypothetical protein PBRA_000726 [Plasmodiophora brassicae] diamond 420 162 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31766585 31766585 PRJNA1215813_P_NODE_3657_length_398_cov_1.440000_g3577_i0 PRJNA1215813 3657 398 1.44 5.7312 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 156 6.16e-42   NR CEP01082.1 37360 g3577 i0 56.1 5.90954773869347 132 58 99.5 0 398 3 202 333 CEP01082.1 hypothetical protein PBRA_008394 [Plasmodiophora brassicae] diamond 2352 157 0.993630573248408 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;